Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11420 ATGTTCAGCATAATATCTAGGAGTGCCAGTGGTCCACCTTGTGGCAAAAGGATTATTGCAGGCCGCATAGTGAAGGAAAGCTATGGTACTGCCAAACAACAGCATACATTTACGATTGAAGTACTCTGGAGCAAGGGAGAAAAGCCTCTACCTCCCCTTTGCCAACTACTGATTAAGGGTCGAAACCTTTATAGGTTGAAGACTTTGAGACAGAAATGGGAGGATGAAGGGAAAAGGCAGAAAACATTGATGGAAAAACACTCAAGGGGATCTATTGCCAGGGCAGATAGAGAAGCAAGGATACAAGAAAAGGAGAAGAGAAAAAATATTATGAAAAATAGGATCTCCAAAAAGAATTCAGTAAGGAACCAATGTCAATCACATTCAGGCATTGTGGTGTCACAATATCAACCTCAAAAAACAGAAATAGCCATTTATCCAGAAAAGCCAGAATTTACATCTCAAAATTCAGGTTTACTGGCCAATACAACAAAACAAACATCTGCTATTATAAATAAACCAGCAGCTGTAACTGAACAGCATGGTATGTATGTTCACCATATACATAATCAGCAAACTGGGAAGCTCTCAGCTGAATTTAGTGAGAAATACCACCACCCTTTCACTGACTTCCAATCCAGAGAAAATCCAACTGTCATTGAGAAATACCACTCTTTCATTGCTGAGCCAAACAGATTTACAGAGATGACTTATCATAGGAAGCCTTTGGCAACTGCAAATCACTTTCATCCATTGATGCCCGTGGGAGGTGCTATAAGCAGAGAAAGCTATATGCAGAGACAGTTGTGTAGACATTATTCCCGTGGGAGGTGCTATTTTGGGGACAACTGTAAATTCTTACATGATTTGAGAGACTAA 879 0.4005 MFSIISRSASGPPCGKRIIAGRIVKESYGTAKQQHTFTIEVLWSKGEKPLPPLCQLLIKGRNLYRLKTLRQKWEDEGKRQKTLMEKHSRGSIARADREARIQEKEKRKNIMKNRISKKNSVRNQCQSHSGIVVSQYQPQKTEIAIYPEKPEFTSQNSGLLANTTKQTSAIINKPAAVTEQHGMYVHHIHNQQTGKLSAEFSEKYHHPFTDFQSRENPTVIEKYHSFIAEPNRFTEMTYHRKPLATANHFHPLMPVGGAISRESYMQRQLCRHYSRGRCYFGDNCKFLHDLRD. 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11420 292 Gene3D - 259 292 - -
Seca3g11420 292 SMART c3hfinal6 265 290 IPR000571 GO:0046872
Seca3g11420 292 Pfam CCCH-type zinc finger 269 289 IPR041367 -
Seca3g11420 292 SUPERFAMILY CCCH zinc finger 265 289 IPR036855 GO:0046872
Seca3g11420 292 Coils Coil 94 114 - -
Seca3g11420 292 PANTHER SAP DOMAIN-CONTAINING PROTEIN 127 291 - -
Seca3g11420 292 ProSiteProfiles Zinc finger C3H1-type profile. 264 291 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11420 Seca-Chr3 262253284 262254948 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca3g11420 zf-CCCH_4 4.1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11420 - - lja:Lj3g3v2576220.1 379.793