Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11416 ATGGCTGATTCTTCCTTTGAGATTGATTCCTACTCCTCAAGCCACCAGAGACGACACAATCCAACGCCAGTGAGTTATCGCAGTGTTTCTGGTTCTAGCTCCTTCATACCATCAAGTTCTCGAAGCAATGTCACTTCCAGAACCAGAGCAGCTCGTCGTAACAGAGTTCCTGCTACACCCTTTGCTTCAGATGACGACCATTCATGGCAAGAAGAGGTTTCATGGAAGTTTGAGGCCACTGGGTGGCGTGATTATAGCACAAACTTTGGTTCTGTTCTGAGTCCATGGCCAACTAGTTCCCCATCTGATCACAGTCGTGTGTTTCATCAATCAGCAAATGACTATTACCTTTCTCGCACAAGTGGGTTCAGAGACCTCACAAACTCATCCTATGGAAGAGTTGAACTTTGGAGCCATGTTGCTAGGGACAATGATCATAGTTACTTTGATCCTCATAGTCAGCCTCATGGGTTCTCAAAATTGGGGATCATCAAAGAGGGGGGTAGTGGAAAAGGTAAGAGTAGTCCGTTGGCAGAGGAAGATGAGCTTAGCATGATAGATTATAGCATAAAAGATGAACCTTTTATTTCACCTAGTAGGATTATTCAACATAGTGATTATGGTGGACATTATTATGTTGGTCATGGTGTACCATCACATGGTAGCAAATCCTCTAGCCAACTTCATGGTGGTGGTTATAGTCACCATGACATGATGAAGTTTTCAGGATATGATGAAGAGGCAGAGGAGGATATGGATGAGGAAGATGCAAGTCCTCCAAAGACAGTTGGGCTTCTGAGCTTGTTTAGGTACTCAACAAAGTGGGATTGGGTACTTGTGTTTGTGGGGTGTATAGGGGCTCTCATAAATGGAGGATCACTTCCTTGGTATTCTTATCTTTTTGGAGAATTGGTCAATAAGCTTTCAGGAGCAAACAATGACAAAAACCAAATGATGAATGATGTAGAGAAGATATGCAAATTTATGACCGGGTTAGCTGCAGTTGTGGTAGTTGGAGCATATTTGCAGATAACATGTTGGAGGTTAGTGGGAGAGCGATCTGCTCAGAGAATGAGAACGGAGTATTTAAGAGCGGTTCTTCGACAGGACATAAGTTTTTTTGATACAGAGATCAATACTGGTGATATTATGCATGGAATTGCTAGTGATGTTGCACAAATTCAAGAAGTTATGGGAGAGAAGATGGCCCACTTCATCCATCATGTATTTACATTCATATGTGGGTACGCAGTTGGGTTTAGAAGATCATGGAAAGTCTCTCTGGTGGTATTCTCAGTGACCCCATTAACAATGTTCTGTGGTATTGCTTATAAAGCACTTTATGGTGGTCTAACAGCAAAAGAAGAAGCTTCTTACAGGACAGCTGGTAGCATTGCAGAGCAGGCCATCAGTTCAATTAGGACAGTGTTTTCTTTTGTTGCAGAAAGCCAATTGGCTGAAAAATATGATGAACTACTTCAAAAATCAGCCCCAATTGGTGCAAAACTTGGTTTTGCTAAGGGTGCAGGCATGGGTGTTATCTATTTAGTAACCTATTCAACATGGGCCTTGGCTTTCTGGTATGGCTCTATCTTAATTTCCAAGAATGAACTTAGTGGAGGTGCAGCCATTGCTTGTTTTTTTGGTGTCAATGTTGGGGGAAGAGGGTTGGCATTGGCACTTTCATATTTTGCACAATTTGCACAAGGTACTGTTGCAGCAAGCCGTGTATTCTTCATTATAGAGAGAATCCCTGAGATTGATCCCTATAGTCCTGAGGGTAGGAAGCTTTCTTCTGTTAGGGGAAGGATTGAGTTAAAAAATGTTAGTTTTGCATACCCATCTCGTCCTGATTCTCTCATAATTAACAACCTTAATTTGGTATTTCCATCTTCAAAAACTTTGGCATTGGTTGGTGCAAGTGGAGGTGGCAAATCCACTATCTTTGCTCTCATAGAGAGGTTTTATGACCCTATTGAAGGGATTATCACCTTGGATGGTCATGATTTGAGGACACTACAAGTAAAGTGGGTGAGAGATCAGATTGGGATGGTTGGTCAGGAGCCAATTCTCTTTGCCACATCTATACTGGAAAACATAATGATGGGGAAAGATAATGCCACCAAGGAAGAGGCAATTTCTGCTTGCATTGCTGCTGATGCTCATAACTTCATCTCTACCCTACCATTAGGCTATGACACTCAGGTTGGAGACAGGGGTACAAAACTTTCAGGAGGTCAAAAGCAGCGAATTGCATTGGCTCGTGCAATGATCAAAGATCCTAAAATCCTTCTTTTAGATGAACCTACTAGTGCTCTTGATGCTGAGTCAGAGTCTGCAGTTCAAAGGGCCATTGACAAGATTTCTGCTGGCCGAACAAGCATTGTCATTGCTCACAGGATAGCAACTGTGAAAAATGCTCATGCCATTGTAGTTCTTGAACATGGTTGTGTCAGTGAGATTGGTGACCATCGCCAGCTTATGGGGAAAGCTGGAACCTACTACAACCTTGTCAAGCTTGCTACTGAAGCCATTTCAAAACCTCTCTCTCAAGAAAATGGCATGCAAATAACCAATGATTTATCCATCTATGATAAATCTGCTCCTGATGTATCAAGATCAAGATATGTAGTTGATATCTCAAGGCCTAAAAACTTAAAATCTACACTGGAGGAGAAACAAGAAGAAATGGAAGATAAGCAAAACAAAAAGCCAAGAAAATACAGACTTTCTGAGGTATGGAAACTGCAAAAACCAGAGGTTGTGATGCTATGTTCAGGATTTCTTCTGGGAATGTTAGCAGGTGCTTTTCTGTCTCTTTTTCCATTGGTTTTAGGCATATCCCTTGGAGTATATTTTGACCATGACATTTCAAAGATGAAAAGAGATGTTGGGTACCTTTGTTTAGTACTTGTTGGCCTTGGATTTGGTTGTATAGTTTCCATGACAGGACAACAAGGTTTGTGTGGTTGGGCTGGATCAAAGCTGACACTGAGGGTTAGAAACCTCTTGTTTCAATCCATACTGAAACAAGAACCTGGGTGGTTTGATTTTGATGAAAACTCCACTGGAGTATTAGTGTCAAGGCTTTCAATAGACTCAGTTAGTTTTCGATCAGTACTTGGTGATCGATTCTCAGTCCTTCTTATGGGCTTGAGTTCAGCTGCTGTTGGCCTTGGTGCATCCTTTGCTTTTAATTGGAAACTAACCCTTGTGGCAGCTGCTGTAACTCCTTTAACTCTTGGTGCAAGTTACATAAGCTTGATCATCAATGTTGGACCACAAGTTGATAACAACTCTTATGCCAGAGCTAGCAATATTGCTTCTGGTGCAGTGTCAAACATAAGGACAGTTACTACATTTTCTGCACAGGAACAAATAGTTAAGTCCTTTGATAGAGCCTTGTCAGGACCTAGGAGAAAAGCATTGAAAAGTTCACAACTTCAAGGTCTTATATTCGGGTTCTTTCAAGGTGCCATGTATGGAGCATACACCTTAACTCTTTGGTTTGGTGCTTTCCTTGTAAAACATGACAAAGCAGATTTTGAAGATGTGTATAAGATTTTTCTCATTCTTGTTTTGAGCTCATTTTCTGTTGGACAACTAGCTGGTTTAGCACCAGATACTTCTATGGCAGCTACAGCAATTCCTGCAGTTCTAGATATCATGAACCGAAGGCCATTGATAGGCAATGATAGAACAAGAAGTAGGAAAGTAGAAAGATCAAAGCCATTCCAAGTAGAATTCAAAATGGTGACTTTTGCATATCCATGTAGGCCTGAGGTAACTGTGTTGAGGGATTTCTGTTTGAAGGTTAAAGGTGGAAGCACAGTGGCCTTGGTGGGGCCAAGTGGATCAGGAAAATCAACAGTCATATGGCTTACACAAAGGTTCTATGATCCAGATCAAGGGAAGGTGTTGATAAGTGGGGTAGATTTGAGGGAGATTGATTTGAAGTGGTTGAGGAGGCAAATAGCTTTGGTGGGTCAAGAACCTGCATTGTTTGCTGGGAGCATAAGGGATAATATTGCATTTGGAGACCCAAATGCTTCATGGGCTGAAATTGAAGCAGCTGCAAAGGAGGCTTACATTCACAAATTCATCAGTGGCCTTCCTCAGGGTTATGAAACCCAGGTTGGTGAAAGTGGGGTCCAGTTATCAGGTGGGCAGAAACAAAGAATTGCTATAGCAAGGGCCATATTGAAGAAATCAAAGGTGCTTCTGCTTGATGAAGCAAGCAGTGCCTTGGACTTGGAATCAGAGAAACACATCCAAGATGCCCTTAAGAAAGTTTCCAAAGAGGCAACAACCATAATAGTTGCCCATCGTCTTTCCACAATCAGAGAAGCTGACAAGATAGCTGTTATGAGAGATGGGGAAGTGGTGGAGTATGGGAGCCATGACACTCTCATGGCTTCCATTCAAAATGGTTTGTATGCTAGCCTAGTTCGAGCTGAGACTGAAGCCAATGCCTTTTCTTGA 4482 0.4195 MADSSFEIDSYSSSHQRRHNPTPVSYRSVSGSSSFIPSSSRSNVTSRTRAARRNRVPATPFASDDDHSWQEEVSWKFEATGWRDYSTNFGSVLSPWPTSSPSDHSRVFHQSANDYYLSRTSGFRDLTNSSYGRVELWSHVARDNDHSYFDPHSQPHGFSKLGIIKEGGSGKGKSSPLAEEDELSMIDYSIKDEPFISPSRIIQHSDYGGHYYVGHGVPSHGSKSSSQLHGGGYSHHDMMKFSGYDEEAEEDMDEEDASPPKTVGLLSLFRYSTKWDWVLVFVGCIGALINGGSLPWYSYLFGELVNKLSGANNDKNQMMNDVEKICKFMTGLAAVVVVGAYLQITCWRLVGERSAQRMRTEYLRAVLRQDISFFDTEINTGDIMHGIASDVAQIQEVMGEKMAHFIHHVFTFICGYAVGFRRSWKVSLVVFSVTPLTMFCGIAYKALYGGLTAKEEASYRTAGSIAEQAISSIRTVFSFVAESQLAEKYDELLQKSAPIGAKLGFAKGAGMGVIYLVTYSTWALAFWYGSILISKNELSGGAAIACFFGVNVGGRGLALALSYFAQFAQGTVAASRVFFIIERIPEIDPYSPEGRKLSSVRGRIELKNVSFAYPSRPDSLIINNLNLVFPSSKTLALVGASGGGKSTIFALIERFYDPIEGIITLDGHDLRTLQVKWVRDQIGMVGQEPILFATSILENIMMGKDNATKEEAISACIAADAHNFISTLPLGYDTQVGDRGTKLSGGQKQRIALARAMIKDPKILLLDEPTSALDAESESAVQRAIDKISAGRTSIVIAHRIATVKNAHAIVVLEHGCVSEIGDHRQLMGKAGTYYNLVKLATEAISKPLSQENGMQITNDLSIYDKSAPDVSRSRYVVDISRPKNLKSTLEEKQEEMEDKQNKKPRKYRLSEVWKLQKPEVVMLCSGFLLGMLAGAFLSLFPLVLGISLGVYFDHDISKMKRDVGYLCLVLVGLGFGCIVSMTGQQGLCGWAGSKLTLRVRNLLFQSILKQEPGWFDFDENSTGVLVSRLSIDSVSFRSVLGDRFSVLLMGLSSAAVGLGASFAFNWKLTLVAAAVTPLTLGASYISLIINVGPQVDNNSYARASNIASGAVSNIRTVTTFSAQEQIVKSFDRALSGPRRKALKSSQLQGLIFGFFQGAMYGAYTLTLWFGAFLVKHDKADFEDVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLDIMNRRPLIGNDRTRSRKVERSKPFQVEFKMVTFAYPCRPEVTVLRDFCLKVKGGSTVALVGPSGSGKSTVIWLTQRFYDPDQGKVLISGVDLREIDLKWLRRQIALVGQEPALFAGSIRDNIAFGDPNASWAEIEAAAKEAYIHKFISGLPQGYETQVGESGVQLSGGQKQRIAIARAILKKSKVLLLDEASSALDLESEKHIQDALKKVSKEATTIIVAHRLSTIREADKIAVMRDGEVVEYGSHDTLMASIQNGLYASLVRAETEANAFS. 1494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11416 1493 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 927 1211 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g11416 1493 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1247 1483 IPR003439 GO:0005524
Seca3g11416 1493 FunFam ABC transporter B family member 19 267 600 - -
Seca3g11416 1493 Gene3D ABC transporter type 1, transmembrane domain 267 851 IPR036640 GO:0005524|GO:0016020
Seca3g11416 1493 Pfam ABC transporter 1266 1413 IPR003439 GO:0005524
Seca3g11416 1493 CDD ABC_MTABC3_MDL1_MDL2 604 841 - -
Seca3g11416 1493 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 281 569 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g11416 1493 CDD ABC_6TM_Pgp_ABCB1_D1_like 281 577 - -
Seca3g11416 1493 FunFam ATP-binding cassette transporter, subfamily B, member 2, group MDR/PGP protein PpABCB2 1098 1238 - -
Seca3g11416 1493 FunFam ABC transporter B family member 1 1237 1487 - -
Seca3g11416 1493 Pfam ABC transporter 623 771 IPR003439 GO:0005524
Seca3g11416 1493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1243 1484 IPR027417 -
Seca3g11416 1493 Coils Coil 883 903 - -
Seca3g11416 1493 Pfam ABC transporter transmembrane region 280 551 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g11416 1493 Pfam ABC transporter transmembrane region 926 1195 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g11416 1493 SUPERFAMILY ABC transporter transmembrane region 913 1227 IPR036640 GO:0005524|GO:0016020
Seca3g11416 1493 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 604 840 IPR003439 GO:0005524
Seca3g11416 1493 MobiDBLite consensus disorder prediction 1 52 - -
Seca3g11416 1493 FunFam ABC transporter B family member 1 594 842 - -
Seca3g11416 1493 Gene3D ABC transporter type 1, transmembrane domain 904 1212 IPR036640 GO:0005524|GO:0016020
Seca3g11416 1493 PANTHER ABC TRANSPORTER B FAMILY 243 840 IPR039421 -
Seca3g11416 1493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 595 840 IPR027417 -
Seca3g11416 1493 ProSitePatterns ABC transporters family signature. 1386 1400 IPR017871 GO:0005524|GO:0016887
Seca3g11416 1493 CDD ABC_6TM_Pgp_ABCB1_D2_like 914 1229 - -
Seca3g11416 1493 SUPERFAMILY ABC transporter transmembrane region 261 589 IPR036640 GO:0005524|GO:0016020
Seca3g11416 1493 MobiDBLite consensus disorder prediction 1 65 - -
Seca3g11416 1493 ProSitePatterns ABC transporters family signature. 743 757 IPR017871 GO:0005524|GO:0016887
Seca3g11416 1493 CDD ABC_MTABC3_MDL1_MDL2 1247 1485 - -
Seca3g11416 1493 Gene3D - 1236 1487 IPR027417 -
Seca3g11416 1493 Gene3D - 594 842 IPR027417 -
Seca3g11416 1493 SMART AAA_5 631 832 IPR003593 GO:0016887
Seca3g11416 1493 SMART AAA_5 1274 1460 IPR003593 GO:0016887
Seca3g11416 1493 Gene3D ABC transporter type 1, transmembrane domain 1213 1490 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11416 Seca-Chr3 262212369 262219753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11416 955 1490 Calmodulin-binding Proteins AT2G36910 38.033 3.85e-104 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11416 K05658 - gmx:100816700 2372.43