Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11409 ATGGCTAATGAAGGAGGCAAAAGCAGTGACTTCTATGCGATCCTGGGCTTGAATAAGGAGTGCACTGAATCAGAGCTAAGGAATGCTTATAAGAAACTTGCACTGAAATGGCACCCAGATCGTTGTTCAGCGTCCGGGAATTTGAAGTTTGTGGAAGAAGCTAAGAAGAAATTCCAGGCAATACAACAAGCCTATTCTGTTTTATCTGACTCAAACAAAAGGTTAATGTACGATGTAGGAGTCTACGACAGTGATGATGACGAAAATGGCATGGGGGACTTCTTGAATGAAATGGTCACAATGATGAGCCAGACTGGTCCAAATGAAAATGGTGAGGAGAGCTTTGAGGAGTTGCAACAGCTGTTTGAAGAGATGTTTCAAGCAGATATTGGATTAGATGGAAGCACATCTCTTTCTGCTGCTGGTTGTTCTACTTCATCTACTTACATGACTTACACTGAAAATTCTAATTCAAACAAACGCAATTCCACTGAGATGAATTTTGGGAAGGCAGAGGATTCTTCTAACTTTGATGCCAATTACCAGAACTTCTGTTTTGGGGTTAGTATATTCTACTTTTTTTGTTATGTTATTTCATTTGATATAACATCCATGGCATACACATTACATCATGATTATGAGAAATGA 648 0.3904 MANEGGKSSDFYAILGLNKECTESELRNAYKKLALKWHPDRCSASGNLKFVEEAKKKFQAIQQAYSVLSDSNKRLMYDVGVYDSDDDENGMGDFLNEMVTMMSQTGPNENGEESFEELQQLFEEMFQADIGLDGSTSLSAAGCSTSSTYMTYTENSNSNKRNSTEMNFGKAEDSSNFDANYQNFCFGVSIFYFFCYVISFDITSMAYTLHHDYEK. 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11409 215 CDD DnaJ 10 70 IPR001623 -
Seca3g11409 215 SUPERFAMILY Chaperone J-domain 8 93 IPR036869 -
Seca3g11409 215 PANTHER PUTATIVE, EXPRESSED-RELATED 3 181 - -
Seca3g11409 215 PRINTS DnaJ domain signature 12 30 IPR001623 -
Seca3g11409 215 PRINTS DnaJ domain signature 73 92 IPR001623 -
Seca3g11409 215 PRINTS DnaJ domain signature 53 73 IPR001623 -
Seca3g11409 215 PRINTS DnaJ domain signature 30 45 IPR001623 -
Seca3g11409 215 SMART dnaj_3 9 73 IPR001623 -
Seca3g11409 215 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Seca3g11409 215 Pfam DnaJ domain 10 78 IPR001623 -
Seca3g11409 215 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Seca3g11409 215 Gene3D DnaJ domain 7 135 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11409 Seca-Chr3 262147979 262151540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11409 12 78 C2H2 Transcription Factor Family AT1G74250 41.791 2.93e-11 60.5