Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11403 ATGGCTACAGCTACCAACGCCGCCGCAGCCCCGCCGCGCCAGCTCTCTCAGAAGGAAGCTGACATCCAGATGATGTTGGCTGCCGACGTCCATCTCGGCACCAAAAACTGTGACTTCCAAATGGAACGTTACATTTTCAAGCGCCGCAACGACGGGATTTACATTATAAATCTTGGAAAGACTTGGGAGAAGCTTCAACTTGCTGCTAGGGTTATTGTTGGCATTGAGAACCCTCAGGACATCATTGTCCAATCTGCTAGGCCTTATGGACAAAGAGCCGTTCTCAAGTTTGCACAGTACACTGGTGCTCATGCTATTGCTGGAAGGCACACTCCTGGTACCTTCACCAATCAGCTCCAAACTTCATTCAGTGAGCCTCGCCTTCTCATCCTCACAGATCCAAGAACAGATCATCAGCCCATTAAGGAAGCTGCTCTTGGAAACATTCCAACGATTGCTTTTTGTGACACTGATTCTCCTATGCGGTATGTTGACATTGGAATTCCTGCCAATAACAAGGGCAAACATAGCATAGGTTGTCTGTTTTGGCTTCTTGCTAGGATGGTGTTGCAGATGCGTGGTACTATTCGCCCTGGCCTTAAGTGGGATGTCATGGTGGATTTGTTCTTCTATAGAGAACCAGAAGAGACCAAGCCACAAGAGGAGGAAGAAGCTCCTGCAGGAGATTATGCCATTACAGACTTCAATGCAAGTGCTATTGCTACTGATGGCCAGTGGCCTGCTGCAATTGATCAATCATGGACTGATGCAGTTCCACAACCTATTCCAGCAGTTCCCGGTGTCAGCTGGGCAGCCGCCCCAGAAGCTGTTGCAGGAGACTGGGGTGAGGCTGTTCCACCACCACAACAAATTCCTGTTCCACCTGGAGTTGAGTCTGTCCAACCATCTGGCTGGGATTAA 921 0.494 MATATNAAAAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEETKPQEEEEAPAGDYAITDFNASAIATDGQWPAAIDQSWTDAVPQPIPAVPGVSWAAAPEAVAGDWGEAVPPPQQIPVPPGVESVQPSGWD. 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11403 306 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca3g11403 306 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca3g11403 306 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca3g11403 306 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca3g11403 306 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca3g11403 306 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca3g11403 306 FunFam 40S ribosomal protein SA 21 227 - -
Seca3g11403 306 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
Seca3g11403 306 Hamap 40S ribosomal protein SA [rps-0]. 9 273 IPR027498 GO:0003735|GO:0006412|GO:0015935
Seca3g11403 306 MobiDBLite consensus disorder prediction 279 306 - -
Seca3g11403 306 NCBIfam 30S ribosomal protein S2 17 213 IPR005707 GO:0003735|GO:0006412|GO:0015935
Seca3g11403 306 Gene3D - 21 227 - -
Seca3g11403 306 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
Seca3g11403 306 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca3g11403 306 PANTHER 40S RIBOSOMAL PROTEIN SA 12 291 IPR005707 GO:0003735|GO:0006412|GO:0015935
Seca3g11403 306 Pfam Ribosomal protein S2 124 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca3g11403 306 Pfam Ribosomal protein S2 25 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11403 Seca-Chr3 262110553 262112266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11403 4 278 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.643 1.16e-150 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11403 K02998 - gmx:548014 569.696