Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11391 ATGTGTGGAGGTGCTATTATCTCCGACTTCATCCCGGCGGCGACCGGTGGTTCCCGCCGTGTGACCGCCGACATCCTCTGGCCGAATTTGAGGAAACCAAGTTCGAAGAAGCAGCTGCCTAGGAAGGCAGCACTGTTTTTGGATGATGACTTCGAGGCTGGTTTCAGAGAATTCAAGGATGATTCTGACTTCGAAGAGGACGAGGAAGATGATGATTTGCTGGTCGGTGTTAAGGGCTTTGCCTTTGATTCCACCAAGACCAAGCCTTCCAAGTCCTTCTCTCGGGAAGGATCAACTGCTGCAAAACCTGTGGAATTCAGTGTCCAAGCTGATGAGTCTGCTAAGAGAAAGAGGAAGAATCAGTATAGGGGGATCCGCCAGCGTCCATGGGGAAAATGGGCAGCTGAGATCCGTGACCCAAGAAAGGGGGTTCGTGTTTGGCTTGGAACCTTCAACACTGCTGAGGAAGCTGCAAGAGCTTATGATGCTGAAGCTAGGAGGATCCGTGGCAAGAAAGCCAAGGTGAACTTCCCTGATGGGGCTGCTGGTTCTTCCTCAAAACGTGTCAAGGCCAATCCACAGAAGGAAAATGTTAACTCTGTTAAGCCCAAAGTGAACAAGATGTTCAATTTTGGTGACAACTTGGAGGACTTTTACTCCATGGATCAGATGGAACAGAAGCCACTTGTTAACCAATATGCTAACATGGGCCCCTTCCCTGGAAACGGAGTTCAGCTCTCACCCCTTGCTGCATCTACTGATGTCACCCCTTATTTCAGCTCAGAGCATTCGAGCAATTCATTTGATTATTCTGATCTTGGATGGGGTGAACAGGGCCCAAAGACTCCTGAGATCTCATCCATGCTTTCAGCTCCTCTGGAAGGTGAATCTCAGTTTGTGCAGAGTGCCAATCAGCAGAACAACCTGCAGTCTGACTCCCAGGAACTGCTTCCCATGCAAGATGATTCTGCAAAGTCACTGTCTGAGGAGCTTGCTGATATTGAATCCCAGCTGAAGTTCTTTGAGACCCCTTATCTTGATGGAAGTTGGGATGATGCTTCATTGGCTTCCTTGCTGAATGGAGATGCAACTCAGGATGGTGGAAACTCAATGAACCTTTGGAGCTTTGATGACCTGCCTTCCATTGCAGGGGGGGGGTTTTCTGAGAAACTTCTTTGTCTCCCCAGTTGTGTAAATAAAGCTACAAGAATGGTGGTCGTGGTGTTGGTGATGCAGTCAGAACAAGTAACCCGCTTAAGTATGTGTGGAGTTTAA 1275 0.4863 MCGGAIISDFIPAATGGSRRVTADILWPNLRKPSSKKQLPRKAALFLDDDFEAGFREFKDDSDFEEDEEDDDLLVGVKGFAFDSTKTKPSKSFSREGSTAAKPVEFSVQADESAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDGAAGSSSKRVKANPQKENVNSVKPKVNKMFNFGDNLEDFYSMDQMEQKPLVNQYANMGPFPGNGVQLSPLAASTDVTPYFSSEHSSNSFDYSDLGWGEQGPKTPEISSMLSAPLEGESQFVQSANQQNNLQSDSQELLPMQDDSAKSLSEELADIESQLKFFETPYLDGSWDDASLASLLNGDATQDGGNSMNLWSFDDLPSIAGGGFSEKLLCLPSCVNKATRMVVVVLVMQSEQVTRLSMCGV. 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11391 424 FunFam Ethylene-responsive transcription factor 2 120 179 - -
Seca3g11391 424 SUPERFAMILY DNA-binding domain 121 179 IPR016177 GO:0003677
Seca3g11391 424 MobiDBLite consensus disorder prediction 176 196 - -
Seca3g11391 424 Pfam AP2 domain 121 170 IPR001471 GO:0003700|GO:0006355
Seca3g11391 424 SMART rav1_2 121 184 IPR001471 GO:0003700|GO:0006355
Seca3g11391 424 MobiDBLite consensus disorder prediction 265 287 - -
Seca3g11391 424 ProSiteProfiles AP2/ERF domain profile. 121 178 IPR001471 GO:0003700|GO:0006355
Seca3g11391 424 Gene3D AP2/ERF domain 120 179 IPR036955 GO:0003700|GO:0006355
Seca3g11391 424 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Seca3g11391 424 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Seca3g11391 424 CDD AP2 121 179 IPR001471 GO:0003700|GO:0006355
Seca3g11391 424 PANTHER DNA-BINDING DOMAIN 94 301 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11391 Seca-Chr3 261960234 261963763 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11391 1 387 AP2-EREBP Transcription Factor Family AT3G14230 44.282 5.21e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca3g11391 AP2 2.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11391 K09286 - gmx:100818646 488.419