Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11390 ATGTGTGGAGGTGCTATTATCTCCGACTTCATCCCGGCGGCGACCGGTGGTTCCCGGCGTGTGACCGCCGACATCCTGTGGCCGAATTTGAGGAAACCCAGTTCGAAGAAGCAGCTGTTGAATGATGACTTCGAGGCTGGCTTCAGAGAATTCAAGGATGACTCTGACTTCGAAGAGGAAGAGGAAGATGATGACTTCCCGGTCGGTGTTAAGGGTTTTTCCTTTGATTCCACCAAGACCAAGCCTTCCAAGTTCCTCTCTCGGGGATTGAAATCTGCAAAACCTGTGGAATTCAGTGTCCAAGCTGATGAGTCTGCTAAGAGAAAGAGGAAGAATCAGTATAGGGGGATCCGCCAGCGTCCATGGGGAAAATGGGCAGCTGAGATCCGTGATCCAAATAAGGGGGTTCGTGTTTGGCTTGGAACCTTCAACACTGCTGAGGAAGCTGCAAGAGCTTATGATGCTGAAGCTAGGAGGATCCGTGGCAATAAAGCCAAGGTGAACTTCCCTGATGGTGCTGCAGGTTCTTCCTCAAAACGTGTCAAGGCCAATCCACAGAACCAGCAAGTGAAGGAAAATGTAAACTCTGTTAAGCCCAAATTGAACAAGATGTTCAATTTTGGTGACAACATAGAGGACTACTACTCCTCTATGGATCAGGTTGAACAAAAGCCAGTGGTTAACCAGTATGCTAACATGGGACCCTTCCCTGGAAATGGAGTTCAGCTCTCACCCCTTCCTGCATCTACTGATGTCACCCCTTATTTCAGCTCAGAGCATTCAAGCAATTCATTTGATTATTCTGATCTTGGATGGGGTGAACAGGGTCCAAAGACTCCTGAGATCTCATCCATGCTTTCTGCTCCTCTGGAAGGTGAATCTCAGTTTGTGCAGAGTGCTAATCAGCAGTCTAACTCTCAGGATCTGCTATCCATGCAAGATGGTTCTGCAAAGTCACTATCTGAGGAGCTTGCAGATTTTGAATCCCAGCTGAAATTCTTTGAGACTCCTTATCTTGATGGAAGTTGGGATGATGCTTCATTGACTTCCTTGCTGAATGGAGATGTAACTCAGGATGGTGGAAACTCAATGAACCTTTGGAATTTTGATGACCTGCCTCCCATTGCAGGAGGGGTTTTCTGA 1143 0.4742 MCGGAIISDFIPAATGGSRRVTADILWPNLRKPSSKKQLLNDDFEAGFREFKDDSDFEEEEEDDDFPVGVKGFSFDSTKTKPSKFLSRGLKSAKPVEFSVQADESAKRKRKNQYRGIRQRPWGKWAAEIRDPNKGVRVWLGTFNTAEEAARAYDAEARRIRGNKAKVNFPDGAAGSSSKRVKANPQNQQVKENVNSVKPKLNKMFNFGDNIEDYYSSMDQVEQKPVVNQYANMGPFPGNGVQLSPLPASTDVTPYFSSEHSSNSFDYSDLGWGEQGPKTPEISSMLSAPLEGESQFVQSANQQSNSQDLLSMQDGSAKSLSEELADFESQLKFFETPYLDGSWDDASLTSLLNGDVTQDGGNSMNLWNFDDLPPIAGGVF. 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11390 380 SMART rav1_2 113 176 IPR001471 GO:0003700|GO:0006355
Seca3g11390 380 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Seca3g11390 380 PANTHER DNA-BINDING DOMAIN 84 293 IPR044808 GO:0003700|GO:0009873
Seca3g11390 380 MobiDBLite consensus disorder prediction 168 189 - -
Seca3g11390 380 SUPERFAMILY DNA-binding domain 113 171 IPR016177 GO:0003677
Seca3g11390 380 Gene3D AP2/ERF domain 112 171 IPR036955 GO:0003700|GO:0006355
Seca3g11390 380 FunFam Ethylene-responsive transcription factor 2 112 171 - -
Seca3g11390 380 CDD AP2 113 171 IPR001471 GO:0003700|GO:0006355
Seca3g11390 380 ProSiteProfiles AP2/ERF domain profile. 113 170 IPR001471 GO:0003700|GO:0006355
Seca3g11390 380 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Seca3g11390 380 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11390 Seca-Chr3 261932011 261934584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11390 1 380 AP2-EREBP Transcription Factor Family AT3G14230 43.842 8.73e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g11390 AP2 4.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11390 K09286 - gmx:100818646 485.337