Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11383 ATGGAGGGAACTTCATATGCCTCTATACCCTTTACTTTTGATGATGATGATCATGATAATCTCTTAGTTGATGATTTCTACTTTTCAGCACTTTACGATGCTGAAGAAATATTTCCAATTTCTGATGAGAAATACGCACAAGAACTACAGCTACAAGAAGCTCTATATTCCTCTGTTATATCAAGTAGTACTAGAGTTATAAACCAAGAAGCCTTATATTCCTCTGTTATGTCAAGTACTAGAGTTATAAATCAAGTGGATGTAGAAGCTGACACCTTTTTGAAAACCCTCAAGGGGAAACAGAAAGTGACTGGTGAATCTTCTCAAGTCTACTGTGCTATTTGCATGGAGGGAAAACCTGCTGGAGAAATGTTCAGAAGCCAAAACTGCTCTCACTCTTTCTGTGATGATTGTGTTGGAAGATATGTTGCTGCAAAGATTCAGGAGAATATGTCAATGATCAAATGCCCTGACCCTAAATGCAGGGGTATTTTGGAGCCTCATCACTGTCGTTCAATTGTACCAAAAGAGGTGTTTGATCGATGGGAAAATGCACTTTGTGAGAATGTGGTGCTTGGATCACAAAAATTTTACTGCCCTTTTAAGGATTGTTCAGCTATGCTTGTGAATGATGAAGAGGAAATTGTGACTGCTTCGGAATGTCCACATTGTAATAGATTGTTCTGTGCACAGTGCAATGTTTCATGGCATGCAGGAATTGGTTGTAGGGAGTTTCAAGGCTTGAAAGAGGGAGAACGAGAAAGGGAAGATCTTATGGTAATGGAACTTGCCAAAAACAAGAATTGGAAAAGATGTCTCAGATGCAAATTCTATGTGGAAAAAATTGTGGGATGTTCACGCATTTTATGCAGATGTGGGTATGAATTTTGCTATGGCTGTGGATCCCCTTGGACTCAGACCCATTATGCATGCGGATCTCAATAA 945 0.3926 MEGTSYASIPFTFDDDDHDNLLVDDFYFSALYDAEEIFPISDEKYAQELQLQEALYSSVISSSTRVINQEALYSSVMSSTRVINQVDVEADTFLKTLKGKQKVTGESSQVYCAICMEGKPAGEMFRSQNCSHSFCDDCVGRYVAAKIQENMSMIKCPDPKCRGILEPHHCRSIVPKEVFDRWENALCENVVLGSQKFYCPFKDCSAMLVNDEEEIVTASECPHCNRLFCAQCNVSWHAGIGCREFQGLKEGEREREDLMVMELAKNKNWKRCLRCKFYVEKIVGCSRILCRCGYEFCYGCGSPWTQTHYACGSQ. 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11383 314 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 79 305 IPR031127 GO:0004842|GO:0016567
Seca3g11383 314 ProSiteProfiles TRIAD supradomain profile. 108 314 IPR044066 -
Seca3g11383 314 SUPERFAMILY RING/U-box 106 189 - -
Seca3g11383 314 SUPERFAMILY RING/U-box 253 311 - -
Seca3g11383 314 ProSiteProfiles Zinc finger RING-type profile. 112 160 IPR001841 -
Seca3g11383 314 Pfam IBR domain, a half RING-finger domain 182 242 IPR002867 GO:0008270
Seca3g11383 314 Pfam IBR domain, a half RING-finger domain 263 309 IPR002867 GO:0008270
Seca3g11383 314 SUPERFAMILY RING/U-box 189 246 - -
Seca3g11383 314 CDD Rcat_RBR_unk 268 304 - -
Seca3g11383 314 Gene3D - 240 314 - -
Seca3g11383 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 192 IPR013083 -
Seca3g11383 314 ProSitePatterns Zinc finger RING-type signature. 130 139 IPR017907 -
Seca3g11383 314 SMART ibrneu5 252 311 IPR002867 GO:0008270
Seca3g11383 314 SMART ibrneu5 180 242 IPR002867 GO:0008270
Seca3g11383 314 FunFam RBR-type E3 ubiquitin transferase 107 193 - -
Seca3g11383 314 CDD BRcat_RBR_unk 193 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11383 Seca-Chr3 261859295 261865430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11383 33 303 C3H Transcription Factor Family AT2G19610 24.113 2.40e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11383 K11975 - gmx:100815626 421.009