Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11381 ATGGCTTCTAATTCTTCTCAAGGAAAGACATCAAAAAAGCCAATCACAAGGAGGCGAAAGATCGAGATCAAGAAAGTGGAAGAACTGAACAAGCGTCACGTGACTTTCTCGAAAAGGAAGCTTGGCCTTTTCAACAAAGTAACTGAGCTATCCATTCTATGCCAAGCAGAAACTGCATTGATCGTTACCTCTCCCAACGGCAAGCTCTATGCATGTGGTTATCCAAACCCTGACACTGTCATAAAACGGTTTCTCACCCAAGGTCCACCTGTTGAGGAAAAAAGACAGCAACAAGAAGAAGAAGCCGTTGAAATCCTAAGGCAACAGTATGAGGCCATTCAAGACCAATTGAAAGCAGAGAAGAAGAACCTTCAAGAAATCACAGAAGCACAAAAGAGCAGTCCTTGCTTCCCTTCTTGGTGGAATCTCTCCATTGAGGATATGAATTTGGAGTCTCTTGAACACTTTATGGAATCCATGAAACTTTTGAGGCTCAACCTTGTTGCTTCTATGCAAGAGAAGAAGTTCGTTCCACTACAAGAGAACGCCTACCCTCCATTCCTACTTCAAGAGAACGCATACCCTCCACTCCTACCGATACCAATTTCGGTAGCTCCACCACCAGCTGTGCCAAATTGGTCGTTGAATGGTGTGCAACAACAACTACAGCATTGGAAGAGTCTTGGTGGTGTTGGTAGTAGTACCAGCAGCACTCCTGCTAGTTTCATGGTTACTAATTTTGGCCTTTATTAA 753 0.4382 MASNSSQGKTSKKPITRRRKIEIKKVEELNKRHVTFSKRKLGLFNKVTELSILCQAETALIVTSPNGKLYACGYPNPDTVIKRFLTQGPPVEEKRQQQEEEAVEILRQQYEAIQDQLKAEKKNLQEITEAQKSSPCFPSWWNLSIEDMNLESLEHFMESMKLLRLNLVASMQEKKFVPLQENAYPPFLLQENAYPPLLPIPISVAPPPAVPNWSLNGVQQQLQHWKSLGGVGSSTSSTPASFMVTNFGLY. 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11381 250 Gene3D - 28 112 IPR036879 GO:0003677|GO:0046983
Seca3g11381 250 Coils Coil 96 130 - -
Seca3g11381 250 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Seca3g11381 250 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Seca3g11381 250 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Seca3g11381 250 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Seca3g11381 250 PANTHER MADS BOX PROTEIN 18 167 - -
Seca3g11381 250 SUPERFAMILY SRF-like 17 87 IPR036879 GO:0003677|GO:0046983
Seca3g11381 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 71 IPR002100 GO:0003677|GO:0046983
Seca3g11381 250 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11381 Seca-Chr3 261847837 261848589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11381 18 164 Type I MADS-box Gene Family AT5G60440 34.641 5.21e-25 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca3g11381 SRF-TF 1.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11381 - - gmx:100818284 204.142