Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11380 ATGTTTCAGTTTCATCCTCAAGGAGCTCCCAAACAAATTTGTACTCTGCTTGCTGTTACCTGTGCCACTAGTTTTGTTGAGCACAGGCCCCCACAGGATCAGCGCAAATACCCTTTTCCTGAGTTGGTTTCTGCGGGGCGTCTTGAGGTTCAAACTTTGTGCAATCCAGAAAGGGAACAGTTTCGTAAAGTTCTTGAGTCGTATCAACCAAATTTTGTATACTTACAAGGAGAGCAGCTAGCGAATGAGGAAGTTGGTTCACTGGTTTTGCAAGGTGTGGAATTATCCACCCCTGAAGCTATAGTAGAGCTCTTTGGTTCCACATTGCCGACGGCTGTTTATTTAGAAATCCCAAATGGAGAAAGTTTTGCAGAGGCTCTTCATCTTAAGGGAATCCCATATGTTATATTTTGGAAGAATCCTTTTTCTTGTTATGCTGCCTGCCATTTTCGTCAAGCATTTTTTTCAGTGGTGCAGAGTTCATCTACGCATACGTGGGATGCTTTCCACCTTGCACGTGCCTCTTTTGAACTCTACTGTGTTCAAAATGATCAAGTACTTCCTACTGATGACAATGATGCTAATAGTGAGATGGGGCCACACCTTCTTGGCGATTGTCTCAAAATCAATGTTGACCCTCCAGAGATTGGTGAAGAAGATGACGAAGAAGGTTCCTCAGGCAGTCTTCCTGCTATAAAGATACACGACGATGAAGTGAACTTGAGATTTCTCATCTGTGGTGCACCTTCCTCTGTTGATGAGTCATTGCTGAGATCTTTGGAGGACGGACTCAGAGCTCTCTTAACCATTGAAATACGTGGTTGCAAGCTCCATGGCAAGTTTAGTGCCCCACCACCACCTCTTCAGGCAGCTGCTTTTTCTCGCGGAGTTGTGACCATGCGATGTGATATATCAACTTGCAGTTCTGCACATATCTCACTTCTGGTATCCGGCAGTGCACAGACTTGTTTTAATGACCAGCTCCTGGAGAATCATATAAAAAATGAGATAATAGAGAAGAGTCAGCTAGTTCATGCACAACTCAACCAGGGAAACAAACAGAGTATCTCAGAACCTCGCAGATCTGCTTCGATTGCTTGTGGAGCAACTGTATTTGAAATTTGCATGAAGCTTCCTCAATGGGCTTTGCAGATTTTGAGACAGCTAGCACCTGATGTTTCTTATCGAAGTTTAGTTGCACTTGGCATTGCTAGTATTCAAGGGTTGCCTATAGCTTCTTTTGAGAAAGATGATGCTGAACGCTTACTTTTCTTCTATCAAAGCTGTGAGAAAGATATCTGTGCAAACAACATAATTTTCAGCAGTACCCCTGGTTGGTTGAAACCACCCCCTCCTACAAGAAAGAGGTGTGAACCAAGTCAAGGGGCTAGCCATGGTCTTCATGATGGTGCCTTTGCAGGGCAGGGTGCTGTTAAAAAAGTAGATGACGAGGAAAAGGATAGAAAAATGGTAAATGGGATCAGCACACCATTAACTCCAGCTAGGCAGAGATTAAAAGTTTCTGCAATGAGGCCAATTCCTCATATTCGTCGCCATAGAATGACACCTTTTTGTGGACCTTCTGAGATAGATGGCCTTGATGGTGCCCAAGTTGAGGCTAATTTGCCACTCGTTGCCCCTAAGCGCAGTAGTATGGGATCATCATCTGCAACACAGAGAAAATCGTTTTCAAGCTCAGCTCAGTCTAAGCAGGTTATTTCCTTGAATCCATTACCTTTGAAGAAACATGGTTGTGGCAGAGGTCCAGTACAGACTTGCTCTGAGGAGGAATTTCTTAAAGATGTCATGGAGTTTCTGATTCTCCGGGGGCATAGTCGACTGATTCCTCAAGGAGGGATTACCGAGTTCCCTGATGCCATACTCAATGGAAAACGCCTTGATCTCTACAACTTGTATAAAGAGGTGGTTACAAGGGGAGGCTTTCATGTTGGCAACGGCATCAACTGGAAGGGACAAATCTTTTCAAAGATGCGCAATTACACAACAACCAACAGAATGACTGGAGTTGGAAATACACTGAAAAGACATTATGAAACCTACCTTCTAGAATATGAATTAGCGCATGATGATGTGGATGGAGAGTGCTGCTTGTTGTGTCACAGTAGCGCAGCTGGGGATTGGGTGAACTGTGGCATATGTGGTGAGTGGGCCCACTTCGGCTGTGACAGAAGGCAGGGTCTTGGCGCATTTAAGGATTATGCAAAAACAGATGGGCTAGAATATATATGTCCTCATTGTAGTGTTGCAAATTTCAAGAAAAAACAAAGTGTTGCTAATGGGTATTCTCAAGGGTCAATGTCACAACGACCCCTCTGA 2337 0.4407 MFQFHPQGAPKQICTLLAVTCATSFVEHRPPQDQRKYPFPELVSAGRLEVQTLCNPEREQFRKVLESYQPNFVYLQGEQLANEEVGSLVLQGVELSTPEAIVELFGSTLPTAVYLEIPNGESFAEALHLKGIPYVIFWKNPFSCYAACHFRQAFFSVVQSSSTHTWDAFHLARASFELYCVQNDQVLPTDDNDANSEMGPHLLGDCLKINVDPPEIGEEDDEEGSSGSLPAIKIHDDEVNLRFLICGAPSSVDESLLRSLEDGLRALLTIEIRGCKLHGKFSAPPPPLQAAAFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLENHIKNEIIEKSQLVHAQLNQGNKQSISEPRRSASIACGATVFEICMKLPQWALQILRQLAPDVSYRSLVALGIASIQGLPIASFEKDDAERLLFFYQSCEKDICANNIIFSSTPGWLKPPPPTRKRCEPSQGASHGLHDGAFAGQGAVKKVDDEEKDRKMVNGISTPLTPARQRLKVSAMRPIPHIRRHRMTPFCGPSEIDGLDGAQVEANLPLVAPKRSSMGSSSATQRKSFSSSAQSKQVISLNPLPLKKHGCGRGPVQTCSEEEFLKDVMEFLILRGHSRLIPQGGITEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANFKKKQSVANGYSQGSMSQRPL. 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11380 778 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 696 758 IPR013083 -
Seca3g11380 778 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 6 776 IPR042293 -
Seca3g11380 778 MobiDBLite consensus disorder prediction 547 570 - -
Seca3g11380 778 Gene3D - 590 695 IPR036431 GO:0003677
Seca3g11380 778 MobiDBLite consensus disorder prediction 548 570 - -
Seca3g11380 778 MobiDBLite consensus disorder prediction 449 471 - -
Seca3g11380 778 SMART bright_3 593 697 IPR001606 GO:0003677
Seca3g11380 778 SUPERFAMILY ARID-like 592 707 IPR036431 GO:0003677
Seca3g11380 778 ProSiteProfiles ARID domain profile. 592 696 IPR001606 GO:0003677
Seca3g11380 778 Pfam ARID/BRIGHT DNA binding domain 595 692 IPR001606 GO:0003677
Seca3g11380 778 SUPERFAMILY FYVE/PHD zinc finger 695 762 IPR011011 -
Seca3g11380 778 CDD PHD_ARID4_like 702 753 - -
Seca3g11380 778 SMART ARID_2 589 692 - -
Seca3g11380 778 CDD ARID 594 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11380 Seca-Chr3 261816090 261825966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11380 4 767 ARID Transcription Factor Family AT3G43240 61.140 0.0 948
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Seca3g11380 ARID 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11380 - - gmx:100816540 1419.06