Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11372 ATGTGTAGCAATGCCTTGGCTATGACCAAGAACATGACGGATTCTGATATAGCAAACTATGAGCAGAAGATGATGCTGAAAACGAGGAAGCTAATGGAAACAGAGGAAACAGGGGAAGGTGAAGTGAAGTGGCCAGAGTGGATTTCTGCGGCGGATAGGAGGCTTCTTCAGTCGACGGAGGTGAAAGCTGACGTGGTGGTGGCGGCGGATGGGAGTGGGGACTTCAAGACGGTGTCGGCTGCGGTGGCTGCGGCGCCGGAGAAAAGTAGCAAGAGGTATGTGATAAAGATAAAAGCAGGGGTGTATAGAGAGAATGTGGAGGTGCCAAAGAAGAAAACGAATATAATGTTCTTGGGAGATGGTAGAATCAACACTATAATCACTGGTAGCAGAAATGTTGTTGATGGAAGCACCACTTTTCACTCTGCCACTGTCGCCGTTGTGGGTGGACAATTTTTAGCACGAGACATAACTTTCCAAAACACAGCAGGTCCCTCAAAGCACCAAGCTGTGGCCCTAAGAGTTGGTGCGGACCTTTCAGCCTTCTACAATACCCTTTATGTTCACAACAATCGCCAATTCTTTGTGAATTGCCTCATAGCAGGGACAGTTGATTTTATCTTTGGTAATTCAGCTGTGGTGTTCCAAGATTGTGACATTCATGCTAGGCTTCCTGATTCAGGCCAAAAGAACATGGTCACAGCACAAGGCAGGGTTGATCCTAACCAAAACACTGGCATTGTAATCCAAAAATGTAGAATTGGTGCTACTAAGGACTTGGAAGCTGTGAAGAAGAGTTTCCCTACTTATCTTGGAAGGCCATGGAAGGAGTACTCTAGGACTGTGATAATGCAGAGTAGTATTAGTGATGTGATTGACCCTGTTGGGTGGCATGAGTGGAATGGGAACTTTGCTTTGAACACATTGGTTTATAGAGAGTATCAGAATACTGGGCCTGGTGCTGGAACTTCAAAGAGGGTTACATGGAAAGGGTTTAAGGTCATTACTAGTGCTGCTGAGGCCCAGCCTTTTACTCCTGGAAGTTTCATTGCGGGCTCTAACTGGGGGTACGGCAAAGTAGATGAGATAGAGCAACAAGCCTTTCAGAAGAAGACACGTAAGCGTGTGATAATCCTGATCGTCTCCTCCTTAGTTCTATTAGCGTTGATCATCGCCGCGGTAGTAGGAGTCGTCGTACACAAGCGCAACACCTCATCATCCTCCCCATCCGACTCGGCTCCACAGACCGAGTTAACCCCGGCCGCGTCACTCAAAGCGGTTTGCGAGGTGACTCAGTACCCTGACTCGTGCTTCGCCACTATCTCCTCCCTCCCAAACTCCAACATCACCCACCCCGAAGCACTCTTCAGGCTCTCCCTGCGCGTCGCCATTGATGAACTCTCGAAGCTCAAGAGCCTCCCTTCGAAGCTCAATGCCAATGGCGACAAGCGTCTCCAGAAGGCGATTGATGTTTGCGCCGTCGTCTTCGACGACGCGCTGGACCGCCTCAACGACTCGATCTCCTCGATCTCTAGCGCCGGAAATATCCTCTCTCCGACGACTGTCGATAACGTCAGGACCTGGCTCAGCGCCGCCATCACGAACCACGACACGTGCCTGGACGCCATCGGCGAGTTGAACTCCACCGCCGCGCACGGCGTTCTTCAGCAAATGGAGGCCGCAATGAAGAACTCCACGGAGTTCTCGAGCAACAGTTTGGCGATCGTGACCAGGATCCTAGGGTTGCTGGCGAAGGTCGGCGCGCCGATCCACAAACGGAGGCTGCTCGGAGAGTTCCCGGAGTGGGTGGGAGCAGCGGAGAGGAGGCTGCTGGCGGCGGATGGCAACGAGACGAAGCCGGATGCGGTGGTGGCGAAGGACGGGAGCGGACAGTACACGACGATCGGAGAGGCGCTGAAGGCGGTGAAGAAGAAGAGCGAGAAGAGATTCGTGGTGTATGTGAAGAAAGGAGATTACGTGGAGAACATCGATTTGGACAAGCATACCTGGAATGTGATGATCTACGGCGATGGCATGACGGAAACCGTCATCTACGGTAGCCGGAATTTCATGGACGGCACGCCCACTTTTGAAACTGCCACTTTCGCTGTTAAGGGGAAGGGATTCATTGCCAAAAATATCAAGTTTGTGAACACTGCAGGTGCATCTAAGCACCAGGCTGTGGCATTGCGTTCTGGCTCGGATCGCTCAGTGTTTTACAGGTGCTCATTTGATGGGTTTCAGGACACCCTTTATGCACATTCTATGCGCCAGTTCTACCGTGAGTGTGAAATTACAGGCACCATAGACTTCATATTTGGCAATGGAGCTGCTATCTTCCAAAATTGCAAAATCATGCCTAGACAGCCTCTACCAAACCAGTTCAACACCATCACAGCTCAGGGCAAGAAGGACCCCAACCAGAACACTGGAATTGTAATCCAAAAATCAACGATCACTACCCTAGACAATGACAATCTCACTGCTCCCACATACCTTGGTAGGCCATGGAAGGATTACTCCACCACTGTTATCATGCAAACTGATATTGGGTCATTCTTGAAACCAGTAGGGTGGATGAGTTGGGTTGCCAATGTGGACCCTCCAAGTACCATCCTCTATGCTGAATACCAGAACAGTGGGCCAGGATCAGATGTGTCCCAGAGGGTCAAATGGGCTGGTTACAAGCCCACTCTCGCGGACGATGTGGCAGGGAAGTTCACGGTGGAGTCCTTTATCCAAGGCCCTGAGTGGTTGCCAAATGCTGATGTGCAGTTTGAGTCTACTTTGTGA 2793 0.5081 MCSNALAMTKNMTDSDIANYEQKMMLKTRKLMETEETGEGEVKWPEWISAADRRLLQSTEVKADVVVAADGSGDFKTVSAAVAAAPEKSSKRYVIKIKAGVYRENVEVPKKKTNIMFLGDGRINTIITGSRNVVDGSTTFHSATVAVVGGQFLARDITFQNTAGPSKHQAVALRVGADLSAFYNTLYVHNNRQFFVNCLIAGTVDFIFGNSAVVFQDCDIHARLPDSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATKDLEAVKKSFPTYLGRPWKEYSRTVIMQSSISDVIDPVGWHEWNGNFALNTLVYREYQNTGPGAGTSKRVTWKGFKVITSAAEAQPFTPGSFIAGSNWGYGKVDEIEQQAFQKKTRKRVIILIVSSLVLLALIIAAVVGVVVHKRNTSSSSPSDSAPQTELTPAASLKAVCEVTQYPDSCFATISSLPNSNITHPEALFRLSLRVAIDELSKLKSLPSKLNANGDKRLQKAIDVCAVVFDDALDRLNDSISSISSAGNILSPTTVDNVRTWLSAAITNHDTCLDAIGELNSTAAHGVLQQMEAAMKNSTEFSSNSLAIVTRILGLLAKVGAPIHKRRLLGEFPEWVGAAERRLLAADGNETKPDAVVAKDGSGQYTTIGEALKAVKKKSEKRFVVYVKKGDYVENIDLDKHTWNVMIYGDGMTETVIYGSRNFMDGTPTFETATFAVKGKGFIAKNIKFVNTAGASKHQAVALRSGSDRSVFYRCSFDGFQDTLYAHSMRQFYRECEITGTIDFIFGNGAAIFQNCKIMPRQPLPNQFNTITAQGKKDPNQNTGIVIQKSTITTLDNDNLTAPTYLGRPWKDYSTTVIMQTDIGSFLKPVGWMSWVANVDPPSTILYAEYQNSGPGSDVSQRVKWAGYKPTLADDVAGKFTVESFIQGPEWLPNADVQFESTL. 931
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11372 930 Gene3D Invertase/pectin methylesterase inhibitor family protein 422 580 IPR035513 -
Seca3g11372 930 SUPERFAMILY Pectin lyase-like 61 356 IPR011050 -
Seca3g11372 930 Coils Coil 17 37 - -
Seca3g11372 930 ProSitePatterns Pectinesterase signature 2. 200 209 IPR033131 -
Seca3g11372 930 CDD PMEI-like_3 426 579 - -
Seca3g11372 930 FunFam Pectinesterase 58 364 - -
Seca3g11372 930 FunFam Pectinesterase 420 580 - -
Seca3g11372 930 Pfam Pectinesterase 621 915 IPR000070 GO:0030599|GO:0042545
Seca3g11372 930 Pfam Pectinesterase 64 352 IPR000070 GO:0030599|GO:0042545
Seca3g11372 930 Pfam Plant invertase/pectin methylesterase inhibitor 424 575 IPR006501 GO:0004857
Seca3g11372 930 PANTHER PECTINESTERASE 388 920 - -
Seca3g11372 930 NCBIfam pectinesterase inhibitor domain 407 577 IPR006501 GO:0004857
Seca3g11372 930 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 424 580 IPR035513 -
Seca3g11372 930 FunFam Pectinesterase 615 930 - -
Seca3g11372 930 Gene3D - 58 361 IPR012334 -
Seca3g11372 930 Gene3D - 615 930 IPR012334 -
Seca3g11372 930 SUPERFAMILY Pectin lyase-like 619 927 IPR011050 -
Seca3g11372 930 SMART PMEI_2 419 575 IPR006501 GO:0004857
Seca3g11372 930 ProSitePatterns Pectinesterase signature 2. 765 774 IPR033131 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca3g11372 Seca-Chr3 261724956 261735991 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11372 356 924 Carbohydrate Esterase AT1G53840 57.705 0.0 673