Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11362 ATGATCCAAAGGCTGCATAAACTGTATAAGCATTCTGCTGCAGTGAAGGAAACAGAACAGGTTGAAAGTGATTGTTGTGCTGTGTGTCTAAACCAAATGTCTAGAGGGGAAAAGGTTCGGTCTCTTCCCCTTTGCAACCACAGATATCATGCTGATTGTATTGGTGCTTGGTTGAAGAATCACACCACATGCCCTCTTTGTAGGAACAAAATCACTGACCATGTTCCCCAGAATCAACATAAACAGGTGATGAAACCCTTTAAAGAATCTATGATTGGTTTCATACAGAGATTCTCTGATCTATTGGTTGTTCTTCTCTACACAATACTTCCATCTAGTATCACTGAGACTTTCCCCTTGGTTCATTGA 369 0.4065 MIQRLHKLYKHSAAVKETEQVESDCCAVCLNQMSRGEKVRSLPLCNHRYHADCIGAWLKNHTTCPLCRNKITDHVPQNQHKQVMKPFKESMIGFIQRFSDLLVVLLYTILPSSITETFPLVH. 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11362 122 SMART ring_2 26 67 IPR001841 -
Seca3g11362 122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 75 IPR013083 -
Seca3g11362 122 ProSiteProfiles Zinc finger RING-type profile. 26 68 IPR001841 -
Seca3g11362 122 PANTHER RING-H2 FINGER PROTEIN ATL16 17 82 IPR044600 GO:0016567|GO:0016740
Seca3g11362 122 Pfam Ring finger domain 25 68 IPR001841 -
Seca3g11362 122 CDD RING-H2_PA-TM-RING 25 68 - -
Seca3g11362 122 SUPERFAMILY RING/U-box 15 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11362 Seca-Chr3 261651882 261652250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11362 26 80 C3H Transcription Factor Family AT1G53820 46.154 5.97e-17 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11362 - - cam:101495833 180.644