Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11358 ATGGAGATGGATCTATGGCTGATGCTGGTGCTGCTGTTCATCAGCACCTGCATTCTGGCCATAAACGGTGACACAGATCCAAATGACGTTGCTTCTCTAAAAGTTATGTTTCAAAGTATGAACTCACCAGCCCAGCTAAATTGGCCTGCAAATGGTGATGATCCTTGTGGACAGTCTTGGAAAGGCATCACTTGCTCAGGCAACCGAGTCACAGAGATTAAGTTACCTGGTCTTGAACTAACTGGAACTTTGGGTTACCAGCTACAAACCTTGACATCTGTGACAAACCTAGACCTGAGTAACAACAATATTGGTGGCTCCATACCATACGGACTTCCTCCAAATTTGCAGCACCTAAATCTTGCTAATAATAATTTGAATGGCTCCATACCTTATTCTCTTTCTGATATGACTTCACTTATAGACCTGAATCTTGGCCACAATCAACTCCAACAACCAGTGAATGTTGACTTTCAGAAGCTCTCTTCCCTTTCTACATTGGATCTTTCGTTCAATTCTTTAACAGGTGACCTCCCTCAGACTTTGAGCTCACTTTCAAGCATAACCACCATGTATCTGCAAAACAACCAGTTCACAGGAACCATCAATGTCCTCGCTGATCTGCCTCTTGAGAACTTGCTGGGTACCGGAACAATTGAAAAGCATAAACCTGCAGTGAGCATTGACATTATCAGCAATTTCTTTAAGAATCTGTTATTCATCATAAATTCTATGAAACATAAAATGGTCAAATTTAATGACAGAAAGGATGGCAATGCATGGAGCTCAGGACCTGCACCCCCACCTCCTCCCGGGACACCTCCAATAACAAAAGGCAATCGAAGTCACAAGTCTGGTGGACATGGCACCTCATCAGATGCTGGCACAAGTGATGGTGGCAAAAAATCTGGCATCGGAGGTGGTGCCATTGCTGGAATAGTGATCTCCATCTTAGTTGTTGGGGCGATAATAGCATTCTTTCTGGTGAAGAGAAGATCTAAGAAGTCATTTTCAGATGTGGAAAAGCTTGACAATCAGCCCTTGGCTCCTCTTACTTCAAATGAAGTCCATGAAATGAATTCCGTGCAAACTTCTTCTGTAATTGACTTGAAGACATTTGATGCTTCTGAGGCCTCAATCGGTCTTAAACCCCCACCTTTTGATCGTCGTAAATCATTTGACGAGGACGAGTTTCCAAAGAAGCCTGCTATTGTCAAGAAGACTGTAGCATTTCCTGCAAATGTGAAATCATATTCTATAGCTGACCTGCAGATTGCTACTGGAAGCTTCAGTGTGGATCAACTTTTGGGTGAGGGGTCTTTTGGCCGTGTATACCGTGCTCAATTTGATGATGGAAAGGTTCTTGCTGTGAAGAAGATAGATTCATCTGTCCTTCCCAGTGATTTGTCTGATGATTTTGCAGAAGTAGTTTCAAACATCTCCCATTTGCATCATCCCAATGTGACAGAGCTTGTGGGTTATTGTTCAGAGCATGGACAACACCTCCTAGTCTATGAGTTTCATAAAAATGGATCACTGCATGATTTCCTTCACCTACCTGATGAGTATAGTAAACCACTGATATGGAATTCACGTGTCAAGATTGCTTTGGGGACTGCACGTGCTTTAGAGTACCTACACGAAGTTTGTTCACCATCAGTTGTTCACAAGAATATTAAGTCAGCCAACATATTGCTTGATGTTGATCTTAATCCTCATCTCTCAGACAGTAGATTGGCTAGCTATATTCCAAATGCAAACCAGGTATTGAACAACAATGCTGGATCTGGATATGAAGCTCCCGAAGTTGGCTTGTCTGGTCATTACACTCTTAAGAGTGATGTCTACAGCTTTGGAGTTGTCATGTTGGAACTTCTTAGTGGACGGAAACCATTTGATAGCTCAAGGCCAAGGTCTGAGCAGTCTTTGGTTCGATGGGCAACACCTCAACTCCATGACATTGATGCATTAGCTAAAATGGTTGATCCTGCATTGGAAGGACTATACCCTGTCAAGTCTCTTTCTCGATTTGCTGATGTTATTGCTCTTTGTGTTCAGCCGGAACCTGAATTCCGACCACCAATGTCAGAAGTGGTTCAAGCACTGGTTCGATTAGTGCAGCGAACTAACATGAGCAAGCGAACATTTGGAACTGATCAAGGAAAAACCCAACGAGGGGATGATGACCAAGATACACAAGACATGTAA 2208 0.4284 MEMDLWLMLVLLFISTCILAINGDTDPNDVASLKVMFQSMNSPAQLNWPANGDDPCGQSWKGITCSGNRVTEIKLPGLELTGTLGYQLQTLTSVTNLDLSNNNIGGSIPYGLPPNLQHLNLANNNLNGSIPYSLSDMTSLIDLNLGHNQLQQPVNVDFQKLSSLSTLDLSFNSLTGDLPQTLSSLSSITTMYLQNNQFTGTINVLADLPLENLLGTGTIEKHKPAVSIDIISNFFKNLLFIINSMKHKMVKFNDRKDGNAWSSGPAPPPPPGTPPITKGNRSHKSGGHGTSSDAGTSDGGKKSGIGGGAIAGIVISILVVGAIIAFFLVKRRSKKSFSDVEKLDNQPLAPLTSNEVHEMNSVQTSSVIDLKTFDASEASIGLKPPPFDRRKSFDEDEFPKKPAIVKKTVAFPANVKSYSIADLQIATGSFSVDQLLGEGSFGRVYRAQFDDGKVLAVKKIDSSVLPSDLSDDFAEVVSNISHLHHPNVTELVGYCSEHGQHLLVYEFHKNGSLHDFLHLPDEYSKPLIWNSRVKIALGTARALEYLHEVCSPSVVHKNIKSANILLDVDLNPHLSDSRLASYIPNANQVLNNNAGSGYEAPEVGLSGHYTLKSDVYSFGVVMLELLSGRKPFDSSRPRSEQSLVRWATPQLHDIDALAKMVDPALEGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRTNMSKRTFGTDQGKTQRGDDDQDTQDM. 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11358 735 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 296 708 - -
Seca3g11358 735 MobiDBLite consensus disorder prediction 720 735 - -
Seca3g11358 735 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Seca3g11358 735 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 394 507 - -
Seca3g11358 735 SUPERFAMILY L domain-like 26 212 - -
Seca3g11358 735 SUPERFAMILY Protein kinase-like (PK-like) 412 702 IPR011009 -
Seca3g11358 735 Gene3D Ribonuclease Inhibitor 26 253 IPR032675 -
Seca3g11358 735 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 26 272 - -
Seca3g11358 735 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 508 716 - -
Seca3g11358 735 ProSiteProfiles Protein kinase domain profile. 430 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11358 735 MobiDBLite consensus disorder prediction 256 300 - -
Seca3g11358 735 Gene3D Phosphorylase Kinase; domain 1 396 507 - -
Seca3g11358 735 Gene3D Transferase(Phosphotransferase) domain 1 509 729 - -
Seca3g11358 735 MobiDBLite consensus disorder prediction 278 298 - -
Seca3g11358 735 ProSitePatterns Protein kinases ATP-binding region signature. 436 459 IPR017441 GO:0005524
Seca3g11358 735 Pfam Protein tyrosine and serine/threonine kinase 432 702 IPR001245 GO:0004672|GO:0006468
Seca3g11358 735 MobiDBLite consensus disorder prediction 713 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11358 Seca-Chr3 261595362 261604602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11358 6 734 Strubbelig Receptor Gene Family AT1G53730 64.468 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Seca3g11358 PK_Tyr_Ser-Thr 3.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11358 - - gmx:100780323 1055.82