Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11348 ATGGTATCGGTCATAATACCCTTACTTTTTTTGTCCTTGTTGGTTGTTCAAGTCTCTTCCTCTTGTAACCAGATTGATCAAGACTCCCTTTTGGCCTTCTCTGGGGACATATCCACTTCTCCCCCTTACCCTCCTCTCAATTGGTCTGCTTCTTCTGATTGTTGCCATTGGGAAGGCATTACCTGTGATGGGGATTCACGTGTCACTCATCTTTTGCTACCTTATAGAGGTCTCACTGGCTTCATCTCCCCATCTATCACAAGCCTCGCTGCTCTTTCTCACCTTAATCTCTCCCATAATCGGTTATCTGGTAATCTCCAGAACAAGTTTTTCTCACTGCTTAATCACCTGCTGGTTCTTGATTTAAGCTACAACCATCTCTCTGCTGATAACAGTAGCAGCACTGGTACTGGGGTTATCCAGGAGCTGGATTTGTCTAGTAATTCATTCAATCACTTGGCAGCTGCAGCAGGAGGAGGGAGTTTGGTATCTTTCAATGTTAGTAACAACAGCTTCACAGGTCAAATTCCAACTTCTCTCTTTTGCATTAATGACCATAACTCCTCCTCTATCAGATTCTTGGATTATTCCTCCAATAATTTTGATGGTCCCATTCAGCCTGGACTAGGAGCATGTTCCAAGTTGGAGAGATTTCGAGCAGGTTTCAATTTTCTATCCGGGCCTATCCCAAGTGATATTTTTAATGCTGTTTCTCTCACTGAAATATCATTGCCCCTAAATAAACTCACTGGAACAATTGGTGATGAAATTGTTAGCCTTACCAATCTCACAGTTTTGGAGCTATACTCCAATCATTTCACGGGCCCCATTCCCCAGGATATTGGCAAACTTTCCAAATTGGAAAGGCTTCTGCTTCATGTCAACAATTTGACAGGTACTCTGCCCCCATCCATGATGAACTGTGTCAATCTTGTGGTGTTGAATTTAAGGGTCAACGTCTTGGAGGGAAATCTCTCAGCCTTCAATTTCTCAGGACTCCAAAGACTAGCAACACTTGACCTTGGCAACAATAAATTTACTGGTGTCTTACCACCAACCCTTTATGCATGCAAATCACTAGCAGCAGTAAGGCTAGCATCTAATCAACTTGAGGGACAGATTTCCCCTGAGATACTCGAACTTAAGTCTCTTTCTTTCCTATCAATTTCTACTAACAATCTGAGGAATGTCACTGAGGCTCTGAGAATTCTCACGGGGCTCAAGAAGCTTAGTACCCTTATGCTCTCCAAGAATTTTTTCAATGAAAGGATACCAAATGATACAAACATAATAGACACAGATGGATTCCAAAACCTCCAGGTTCTAGGTTTGGGTGGTTGTAACTTCACAGGTCACATACCAGGCTGGCTTGCAAATCTGAAGAAGCTTGAGGCCTTGGACCTGTCCTTTAATCAAATTAGTGGTTCCATTCCTACTTGGTTAGGTTCACTTCCTCAGCTTTTCTACATGGATTTGTCTGTTAACCTCCTTACAGGTGTATTTCCAATGGAGCTCACAGGACTCCCAGCACTAACATCACAACAGGCAAATGATAAAGTGGAAAGGGCTTACTTGGAGTTACCAGTCTTTGCTGCAGCCAACAATGTTTCCCTTTTGCAATATAATCAGCTTTCCAACCTACCACCAGCAATATATCTGGGAACCAATCGTCTTAGTGGCAGTATACCAATTGAGATTGGCCAACTGAAAGTCCTGCACACGCTGGACCTGAAGAAAAACAACTTCTCTGGCAATATACCTGTGCAAATTTCAAACTTGACTAACTTAGAGAAACTGGACCTCTCAGGAAACCATCTGTCTGGTGAAATTCCTGATTCACTTAGAAGATTACATTTCTTGTCTTATTTCAGTGTAGCATACAATAATCTTCAGGGACAGATACCAACTGGTGGTCAGTTTGATACTTTCTCGTCCTCCAGCTTTGAAGGAAACCCACAATTGTGTGGTTCAGTTATTCAGCACTCTTGTCCTTCTCAACAAAGTACTGATAGTACTGCAGCTAGTGGCAGCTCAAACAGAAAAGTATTGATTGGGCTTATAACTGCATTCTGTTTTGGCTTTGCTGCCTTGGTGACAGTTTTGGCACTGTGGATACTCTCCAAGAGGAGGATCAATCCAGGAGGAGTTTCTGATAAGATTGAACTGGAGTCAATTTCTACCTGCTCCAACAATGGGGTTCATCCTGAGGTTGACAAGGAGACTAGCCTAGTGGTATTGTTCCCCAACAAAACTAATGAAACCAAGGATCTTACCATATTTGAGATCATTAAAGCCACTGAAAATTTCAGTCAGGCAAACATAATAGGATGTGGGGGTTTTGGTTTGGTTTATAAAGCAACTTTACCAAATGGAACTACACTAGCCATCAAGAAACTTTCTGGAGATTTGGGCCTTATGGAAAGGGAATTTAAAGCAGAGGTAGAGGCTTTGTCAACAGCACAACATGAGAACCTGGTGGCATTGCAAGGCTACTGTGTGCATGATGGTTTTCGGCTTCTCATATACAATTACATGGAGAATGGAAGTCTGCATTACTGGTTGCATGAAAAGGCTGATGGTTCATCTCATCTTGATTGGCCAACTCGTTTGAAGATTGCACAAGGAGCAAGTTGTGGTCTGGCTTATTTGCATCAGATATGTGAACCACACATTGTGCACCGTGATATAAAGTCAAGCAATATACTCCTTGATGAAAAGTTTGAGGCACATGTTGCTGATTTTGGTCTGTCCCGATTGATTCTTCCATATCATACTCATGTTACAACTGAACTTGTAGGTACATTAGGTTACATTCCTCCAGAGTATGGACAAGCATGGGTGGCTACCCTGAGAGGAGATGTGTACAGCTTTGGGGTTGTCATGCTTGAGCTGCTCACTGGGAGGAGGCCTGTTGATGTATGCAAGCCAAAAATGTCAAGAGAGTTGGTTGGATGGGTTCAACAGATGAGAAGTGAAGGAAAACAAGATCAACTTTTTGACCCTATTCTAAGAGGGAAGGGCTATGAAGGAGAGATGCTGCAGGTACTGGATGTGGCCTGCATGTGTGTCAGCCACAATCCTTTCAAGAGACCAAGCATCAGAGAAGTTGTTGAATGGCTAAGGAATGTAGGATCAGGCAACCAACACAGAAATAAAGACTAG 3162 0.4266 MVSVIIPLLFLSLLVVQVSSSCNQIDQDSLLAFSGDISTSPPYPPLNWSASSDCCHWEGITCDGDSRVTHLLLPYRGLTGFISPSITSLAALSHLNLSHNRLSGNLQNKFFSLLNHLLVLDLSYNHLSADNSSSTGTGVIQELDLSSNSFNHLAAAAGGGSLVSFNVSNNSFTGQIPTSLFCINDHNSSSIRFLDYSSNNFDGPIQPGLGACSKLERFRAGFNFLSGPIPSDIFNAVSLTEISLPLNKLTGTIGDEIVSLTNLTVLELYSNHFTGPIPQDIGKLSKLERLLLHVNNLTGTLPPSMMNCVNLVVLNLRVNVLEGNLSAFNFSGLQRLATLDLGNNKFTGVLPPTLYACKSLAAVRLASNQLEGQISPEILELKSLSFLSISTNNLRNVTEALRILTGLKKLSTLMLSKNFFNERIPNDTNIIDTDGFQNLQVLGLGGCNFTGHIPGWLANLKKLEALDLSFNQISGSIPTWLGSLPQLFYMDLSVNLLTGVFPMELTGLPALTSQQANDKVERAYLELPVFAAANNVSLLQYNQLSNLPPAIYLGTNRLSGSIPIEIGQLKVLHTLDLKKNNFSGNIPVQISNLTNLEKLDLSGNHLSGEIPDSLRRLHFLSYFSVAYNNLQGQIPTGGQFDTFSSSSFEGNPQLCGSVIQHSCPSQQSTDSTAASGSSNRKVLIGLITAFCFGFAALVTVLALWILSKRRINPGGVSDKIELESISTCSNNGVHPEVDKETSLVVLFPNKTNETKDLTIFEIIKATENFSQANIIGCGGFGLVYKATLPNGTTLAIKKLSGDLGLMEREFKAEVEALSTAQHENLVALQGYCVHDGFRLLIYNYMENGSLHYWLHEKADGSSHLDWPTRLKIAQGASCGLAYLHQICEPHIVHRDIKSSNILLDEKFEAHVADFGLSRLILPYHTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGRRPVDVCKPKMSRELVGWVQQMRSEGKQDQLFDPILRGKGYEGEMLQVLDVACMCVSHNPFKRPSIREVVEWLRNVGSGNQHRNKD. 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11348 1053 SUPERFAMILY Protein kinase-like (PK-like) 754 1040 IPR011009 -
Seca3g11348 1053 Pfam Protein kinase domain 770 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11348 1053 SMART LRR_typ_2 114 138 IPR003591 -
Seca3g11348 1053 SMART LRR_typ_2 460 484 IPR003591 -
Seca3g11348 1053 SMART LRR_typ_2 333 357 IPR003591 -
Seca3g11348 1053 SMART LRR_typ_2 381 404 IPR003591 -
Seca3g11348 1053 SMART LRR_typ_2 260 284 IPR003591 -
Seca3g11348 1053 SMART LRR_typ_2 593 617 IPR003591 -
Seca3g11348 1053 SMART LRR_typ_2 89 113 IPR003591 -
Seca3g11348 1053 SMART LRR_typ_2 141 160 IPR003591 -
Seca3g11348 1053 SUPERFAMILY L domain-like 182 513 - -
Seca3g11348 1053 SMART serkin_6 769 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11348 1053 ProSiteProfiles Leucine-rich repeat profile. 595 617 IPR001611 GO:0005515
Seca3g11348 1053 FunFam Leucine-rich repeat receptor protein kinase MSP1 735 844 - -
Seca3g11348 1053 FunFam Leucine-rich repeat receptor-like protein kinase 845 1051 - -
Seca3g11348 1053 Gene3D Transferase(Phosphotransferase) domain 1 845 1053 - -
Seca3g11348 1053 FunFam Tyrosine-sulfated glycopeptide receptor 1 330 668 - -
Seca3g11348 1053 Pfam Leucine rich repeat 438 497 IPR001611 GO:0005515
Seca3g11348 1053 Gene3D Ribonuclease Inhibitor 156 234 IPR032675 -
Seca3g11348 1053 ProSitePatterns Serine/Threonine protein kinases active-site signature. 891 903 IPR008271 GO:0004672|GO:0006468
Seca3g11348 1053 Gene3D Ribonuclease Inhibitor 235 328 IPR032675 -
Seca3g11348 1053 ProSiteProfiles Leucine-rich repeat profile. 462 485 IPR001611 GO:0005515
Seca3g11348 1053 ProSiteProfiles Protein kinase domain profile. 769 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11348 1053 Gene3D Ribonuclease Inhibitor 329 672 IPR032675 -
Seca3g11348 1053 SUPERFAMILY L domain-like 21 244 - -
Seca3g11348 1053 ProSitePatterns Protein kinases ATP-binding region signature. 775 798 IPR017441 GO:0005524
Seca3g11348 1053 Gene3D Ribonuclease Inhibitor 23 155 IPR032675 -
Seca3g11348 1053 PRINTS Leucine-rich repeat signature 463 476 - -
Seca3g11348 1053 PRINTS Leucine-rich repeat signature 593 606 - -
Seca3g11348 1053 Pfam Leucine Rich Repeat 595 616 IPR001611 GO:0005515
Seca3g11348 1053 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 230 325 - -
Seca3g11348 1053 Gene3D Phosphorylase Kinase; domain 1 732 844 - -
Seca3g11348 1053 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 435 1040 - -
Seca3g11348 1053 SUPERFAMILY L domain-like 436 665 - -
Seca3g11348 1053 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11348 Seca-Chr3 261476596 261479805 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11348 5 702 Miscellaneous Gene Families AT1G17240 50.840 0.0 651
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Seca3g11348 Pkinase 3.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11348 - - gmx:100781943 1704.11