Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11347 ATGGTTTCCAAGTTGATGGTCTCTGTCATAATACCGTTACTCTTTTTGTCCTTGTTGGTTGTTCAAGTCTCTTCCTCTTGTAACAAGAATGACAAAGACTCCCTCTTGGCCTTCTCTCAAAACATAACCACTTATCCTCCTCTCAATTGGTCTTCTTCTTCTGATTGTTGCCATTGGGAAGGCATTACTTGTGATGGGGATTCACGTGTTACTCATCTTTTGTTACCTTCCAGAGGTCTCACTGGCTTCATCTCCCTATCTCTCACAAGCCTCGATTCTCTTTCTCACCTTAATCTCTCCCATAATCGGTTAACTGGCAATCTCCAAAACCAGTTTTTCTCTCTGCTTAATCACCTTTTGGTTCTTGATTTAAGCTACAACCATCTCTCTGGCAGCACTAGCACTGGTGTTATCCAAGAGTTTGATCTGTCTAGTAATTCATTCAATGGAAAAATCCCATCTTCTCTAATTCAGCACCTATCAGGAGGAGGGAGTTTGGTATCTTTCAATGTTAGTAACAACAGCTTCACAGGTCAAATTCCAACTTCTCTCTTTTGCATTAATGACCTTAACTCCTCCTCTATCAGATTCTTGGATTATTCCTCCAATCATTTTGATGGTCCCATTCAGCCTGGACTAGGAGCATGTTCCAAGTTGGAGAAATTTCGAGCAGGTTTCAATCTTCTATCTGGGCCTATCCCAAGTGATATTTTTAATGTTGTTTCTCTCACAGAAATATCATTGCCTCTAAATAAACTCACTGGAACAATTGGGGATGGCATTGTTAGCCTTACCAATCTCACAGTTTTGGAGCTATATTCCAATCATTTTACTGGCCCCATTCCCCAGGATATTGGCAAACTTTCCAAATTGGAAAGGCTACTTCTTCATGTCAACAATTTGACAGGTACTCTGCCCCCATCCATGATGAACTGTGTCAATCTTGTGGTGTTGAATTTAAGGGTCAATGTCTTGGAGGGAAATCTCTCAGCCTTCAATTTCTCAGGACTCCAAAGACTTGCAACACTTGACCTCGGCAACAATAAATTTACTGGTGTCTTACCACCAACCCTTTATACATGCAAATCACTTGCAGCAGTAAGGCTAGCATCTAATCAACTTGAGGGACAGATTTCCCCTGAGATACTTGGACTTAAGTCTCTTTCTTTCCTATCAATTGGTACTAACAATATGAGAAATATCACTGGGGCTCTGAGAGTACTCACGGGGCTCAAGAAACTCAGTACCCTTATGCTCTCCAAGAATTTTTTAAATGAAATGATACCAAACGACACAAACATATTAGACCCAGATGGGTTCCAAAACCTCCAGGTTCTAGGCATGGGTGGTTGTAACTTGACAGGTCAAATACCAGGCTGGCTTGCAAATCTGAAGAAGCTTGAGGTCTTGGACCTGTCCTTTAATCAAATTAGTGGTTCCATTCCTCCTTGGTTGAGCACACTGCCTCAGCTTTTTTACATGGATTTGTCTGTTAACCTCCTTACAGGTGTATTTCCAAAGGAGCTCACAAGACTCCCAGCACTAACATCTCAACAAGCAAATGATAAAATGGAAAGGGCTTACTTTGAGTTACCTGTTTTTGCTGCAGCCAACAATGTTTCTGTTTTGCAATATAATCAGCTTTCCAAGCTACCACCAGCAATATATCTGGGAACCAATCGCCTTAGTGGCAGAATACCAATTGGGATTGGCCAATTGAAAGTCCTTCACGTGCTGGACCTGAAGAAAAACAACTTCTCTGGCAATATACCTGTGCAAATTTCAAACTTGACCAACTTAGAGAAACTGGACCTCTCAGGAAATCAACTATCTGGTGAAATTCCTGATTCACTCAGAAGATTACACTTCTTGTCTTATTTCAGTGTAGCATACAATAATCTTCAAGGACAGATACCAACAGGTGGTCAGTTTGATACTTTCTCCTCCTCCAGCTATGAAGGAAACCCACAATTGTGTGGTTCCGTTATTCAGCGTTCTTGTTTTTCTCAACAAAATAATAATAGTAATAGTACTTCAGCTAGTGGTAGCTCAAACAAAAAAATACTGATCAGACTTATCACTGGAGTTGGTTTTGGCACTGCTTTCTTGATAGTAGTGTTGACACTGTGGATAGTGTCTAAATGGAAGGCCAATCCAAGAGGAGTTCCTAAAAGGATTGATATTGTTCATCCTGAGGTTGACAAGGGGACTAGCCTAGTGGTATTGTTCCCTAACAAAACTAATGAAACCAAGGGTCTTACCATATTTGATATCATAAAAGCCACTGAAAATTTCAGTCAGGCAAACATGATAGGATGTGGGGATTTTGGTTTGGTTTACAAAGCAACTTTACCAAATGGAGCAACTCTAGCCATCAAGAAACTTTTAGGAGATTTGAGCCTTATGGAAAGGGAATTTAAAGCAGAGGTAGAGGCTTTATCAACAGCACAACATGAGAATCTGGTGGCATTGCAAGGATACTGTGTGCATGATGGTTTTCAGCTTCTCATATATTCTTACATGGAGAATGGAAGTTTGGATTACTGGCTGCATGAAAAGGCTGATGGTGCATCTCATCTTGATTGGCCAATTCGTTTGAAGATTGCACAAGGAGCAAGTTGTGGTTTGGCTTATTTGCATAATATATGTGAGCCACACATTGTGCATCGTGATATGAAGTCAAGCAACATACTCCTTGATGAAAATTTTGAGGCACATGTTGCTGATTTTGGGTTGTCCAGATTGATTCTTCCCAATCATACTAACGTTACAACTGAACTTGTAGGTACCTTGGGTTACATACCACCAGAGTATGGACAAGAAAGGGTGGCTACTCCAAGAGGTGATGTGTACAGCTTTGGGGTTGTCATGCTTGAGCTTCTCACTGGGAGAAGGCCTTTTGATGTTGGCAGGCCAAACATGTCAAGAGAGTTAGTTGGTTGGGTTCATCAGATGATAAATGAAGGAAAACAAGATCAAGTATTTGACCCTCTTCTGAGAGGGAAGGGCTTTGAAGGAGAGATGCTGCAGGTATTGGATGTGGCATGCATGTGTGTTAGACAGAATCCTTTAAAGAGACCAAGCATTAGAGAAGTTGTTGAACGACTAAGGAATGCAAGATCATCCAACCAATCCAGATATGAAGACTAG 3150 0.4102 MVSKLMVSVIIPLLFLSLLVVQVSSSCNKNDKDSLLAFSQNITTYPPLNWSSSSDCCHWEGITCDGDSRVTHLLLPSRGLTGFISLSLTSLDSLSHLNLSHNRLTGNLQNQFFSLLNHLLVLDLSYNHLSGSTSTGVIQEFDLSSNSFNGKIPSSLIQHLSGGGSLVSFNVSNNSFTGQIPTSLFCINDLNSSSIRFLDYSSNHFDGPIQPGLGACSKLEKFRAGFNLLSGPIPSDIFNVVSLTEISLPLNKLTGTIGDGIVSLTNLTVLELYSNHFTGPIPQDIGKLSKLERLLLHVNNLTGTLPPSMMNCVNLVVLNLRVNVLEGNLSAFNFSGLQRLATLDLGNNKFTGVLPPTLYTCKSLAAVRLASNQLEGQISPEILGLKSLSFLSIGTNNMRNITGALRVLTGLKKLSTLMLSKNFLNEMIPNDTNILDPDGFQNLQVLGMGGCNLTGQIPGWLANLKKLEVLDLSFNQISGSIPPWLSTLPQLFYMDLSVNLLTGVFPKELTRLPALTSQQANDKMERAYFELPVFAAANNVSVLQYNQLSKLPPAIYLGTNRLSGRIPIGIGQLKVLHVLDLKKNNFSGNIPVQISNLTNLEKLDLSGNQLSGEIPDSLRRLHFLSYFSVAYNNLQGQIPTGGQFDTFSSSSYEGNPQLCGSVIQRSCFSQQNNNSNSTSASGSSNKKILIRLITGVGFGTAFLIVVLTLWIVSKWKANPRGVPKRIDIVHPEVDKGTSLVVLFPNKTNETKGLTIFDIIKATENFSQANMIGCGDFGLVYKATLPNGATLAIKKLLGDLSLMEREFKAEVEALSTAQHENLVALQGYCVHDGFQLLIYSYMENGSLDYWLHEKADGASHLDWPIRLKIAQGASCGLAYLHNICEPHIVHRDMKSSNILLDENFEAHVADFGLSRLILPNHTNVTTELVGTLGYIPPEYGQERVATPRGDVYSFGVVMLELLTGRRPFDVGRPNMSRELVGWVHQMINEGKQDQVFDPLLRGKGFEGEMLQVLDVACMCVRQNPLKRPSIREVVERLRNARSSNQSRYED. 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11347 1049 ProSiteProfiles Leucine-rich repeat profile. 466 489 IPR001611 GO:0005515
Seca3g11347 1049 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Seca3g11347 1049 ProSitePatterns Serine/Threonine protein kinases active-site signature. 887 899 IPR008271 GO:0004672|GO:0006468
Seca3g11347 1049 Gene3D Ribonuclease Inhibitor 137 233 IPR032675 -
Seca3g11347 1049 Pfam Leucine rich repeat 442 501 IPR001611 GO:0005515
Seca3g11347 1049 SMART LRR_typ_2 597 621 IPR003591 -
Seca3g11347 1049 SMART LRR_typ_2 337 361 IPR003591 -
Seca3g11347 1049 SMART LRR_typ_2 264 288 IPR003591 -
Seca3g11347 1049 SMART LRR_typ_2 91 115 IPR003591 -
Seca3g11347 1049 SMART LRR_typ_2 464 488 IPR003591 -
Seca3g11347 1049 SMART LRR_typ_2 411 435 IPR003591 -
Seca3g11347 1049 SMART LRR_typ_2 116 150 IPR003591 -
Seca3g11347 1049 ProSiteProfiles Leucine-rich repeat profile. 599 621 IPR001611 GO:0005515
Seca3g11347 1049 Pfam Leucine Rich Repeat 599 620 IPR001611 GO:0005515
Seca3g11347 1049 SMART serkin_6 765 1034 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11347 1049 Gene3D Ribonuclease Inhibitor 332 676 IPR032675 -
Seca3g11347 1049 FunFam Leucine-rich repeat receptor-like protein kinase 841 1047 - -
Seca3g11347 1049 Gene3D Phosphorylase Kinase; domain 1 734 840 - -
Seca3g11347 1049 Gene3D Ribonuclease Inhibitor 30 136 IPR032675 -
Seca3g11347 1049 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Seca3g11347 1049 PRINTS Leucine-rich repeat signature 94 107 - -
Seca3g11347 1049 PRINTS Leucine-rich repeat signature 597 610 - -
Seca3g11347 1049 SUPERFAMILY L domain-like 40 247 - -
Seca3g11347 1049 FunFam Tyrosine-sulfated glycopeptide receptor 1 334 672 - -
Seca3g11347 1049 ProSiteProfiles Protein kinase domain profile. 765 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11347 1049 Gene3D Ribonuclease Inhibitor 234 331 IPR032675 -
Seca3g11347 1049 Pfam Protein kinase domain 766 1034 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11347 1049 PANTHER LEUCINE RICH REPEAT KINASE 2 261 1046 - -
Seca3g11347 1049 ProSitePatterns Protein kinases ATP-binding region signature. 771 794 IPR017441 GO:0005524
Seca3g11347 1049 Gene3D Transferase(Phosphotransferase) domain 1 841 1049 - -
Seca3g11347 1049 SUPERFAMILY Protein kinase-like (PK-like) 750 1036 IPR011009 -
Seca3g11347 1049 SUPERFAMILY L domain-like 189 517 - -
Seca3g11347 1049 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 234 329 - -
Seca3g11347 1049 SUPERFAMILY L domain-like 440 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11347 Seca-Chr3 261460026 261463208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11347 6 710 Miscellaneous Gene Families AT1G17250 51.452 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Seca3g11347 Pkinase 2.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11347 - - gmx:100781943 1576.61