Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11341 ATGGATAACACATTTCCCATACTAGATTTCATGCCTGTAGGATTCAGATTTCGTCCAACAGATGAAGAGCTTGTGGAGCACTACCTCAAGCACAAGTTGCAGGGTGATGATTTCCCTGTTCATATCATCCCTGAGCTTGATCTTTGCAAGTATGAGCCTTGGGAAATACCAGCTTTCTCGGTGATAAAGTCCGATGACCCAGAATGGTTTTTCTTCAGTCCTCGTGATTACAAATATGCAAAGAGTAAAAGGTTTAACAGGGCAACTAAGTGTGGCTTCTGGAAAGCCACTGGGAATGACCGTAAAATCAAGACCAGAGGCACCAACAATGTCATTGGGACCAAGAAGACTCTTGTTTTCTATGAAGGCCGTGTTCCTTCTGGTGTCAAAACCAGTTGGGTTATTCATGAGTATCATGCTGTTACCTTTGATGATAGCCAGAGGACCTTTGTTTTATGTCGCTTGATGAAGAAAGCTGAGAAAAAAGCTGAAGGGGGAACTGATGCAATGATATGTAATGAAGGGGAGCCCAGTAGACACATAGCTTCCGACTATGAAAATGAAGCAACAGCAGAAGGAATTCCAGATGTAGGTGGTACTTTGCCAGAAATGAATATGGAATCAATCTTTCAGGAACCGCATCAGGCAGAGAATTACTTCCCCTCAAACCAACAGTCTCCAGTTGGAATTGAGCAGGAAGCATCTTTCCCAAACTCCCCACTTCTCAATGCCTATTTTAGAAATGAAAACAGCAGTATGCAGACTCCATTGGAGACTACAGAAGAGGAAGATGAGTTCGTGAATTCAATTTTAGTTGATGGGAATTTTTTTATCACTGAAGAAAGAAGAAATGCTTTTGTCAATAGTTCCACTCAGTCAGAGTCATTGAGAAGGGTATACTATGAAAGCAGTGACACGGATGCTGAAGTAGCCTCTGCACTGGTAAAAATATATGGTCCAAAGTCCAAATGA 972 0.4198 MDNTFPILDFMPVGFRFRPTDEELVEHYLKHKLQGDDFPVHIIPELDLCKYEPWEIPAFSVIKSDDPEWFFFSPRDYKYAKSKRFNRATKCGFWKATGNDRKIKTRGTNNVIGTKKTLVFYEGRVPSGVKTSWVIHEYHAVTFDDSQRTFVLCRLMKKAEKKAEGGTDAMICNEGEPSRHIASDYENEATAEGIPDVGGTLPEMNMESIFQEPHQAENYFPSNQQSPVGIEQEASFPNSPLLNAYFRNENSSMQTPLETTEEEDEFVNSILVDGNFFITEERRNAFVNSSTQSESLRRVYYESSDTDAEVASALVKIYGPKSK. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11341 323 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 243 - -
Seca3g11341 323 Pfam No apical meristem (NAM) protein 12 139 IPR003441 GO:0003677|GO:0006355
Seca3g11341 323 SUPERFAMILY NAC domain 9 158 IPR036093 GO:0003677|GO:0006355
Seca3g11341 323 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Seca3g11341 323 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11341 Seca-Chr3 261406718 261408425 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11341 8 165 NAC Transcription Factor Family AT4G35580 54.601 3.16e-60 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca3g11341 NAM 5.9e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11341 - - aprc:113849171 443.351