Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11339 ATGGGGAACCCAACATCAATGGTGGAAACGGTGCCTGTAGGTTATAGATTCCATCCAACTGATGAAGAGCTTGTGGGTCATTACTTGAAACACAGGTTGCTTGGTGATGATTCCGGGGTGCACAATATCATAGCTGAGGTTGATGTTTGCAAGTTTGAACCTTGGGACTTACCAGTGATGTTAGAATTTTCCAAGGTAAAATCGGATGACCCAGAATGGTATTTCTTCAGTCCTCTTGATTTGAAGTGCACAAAAAGCATGAGATGTAACAGGAAAACCAAGACTGGGTACTGGAAGATCACTGGTAAAGACCGTAACATCAAGACCAGAGCTACCAATAAGGTTATTGGCACAAAAAAGACCCTGGTTTTCTACAAGGGTTGTGGTCGTCGCCGTGACAAGACCAATTGGGTCATTCATGAATATCATGCAGTTACCTTTCCTAATGACAAGAGAGGTTTTGTCTTGTGTCGCTTAATTAAGAAACCAGAGAAAACAGGAGAAGGGGGTGCTGATGAATTAATACATGATGAAGGGAAGCCAAGTAGCCATGTTGCTTCTGACTATGAAAACAATGCAACAGCAGATAGGGATCCAGATGCTTCACCAGAAGTGAATTTGGAATCTTTCTTTCCAGCACCACCTGTAGCAGAGGAATATGACTTCCTCTTAGCACAGCAGTCTCCAGTTGTCACTGAAGAGGCGCCAAATTTCCAAGATTTCTCATTTCTGAATTCCTTTTCTGGGGATGAAGATAGCCTTATGGAGTTAACTACTGAGGAGGAGGGCAATATTGATTCATTCCTGAATTCAATTTTAGCTAATAATGATGTTTTTATTGGACAAGAAACAGCACCTGCTTTTTTTGATGATTCCACTGCCTCACAGTCTTTGAGCAAGGTCTATAATGAAAGCAGAGAAACAACAGACACTGAACTACTCTCTGCACTGGTAAAGACAGAGAATTCTTGCATGGGCAGAGTGTTTATAACCACACCACTGAAGCATATTCTTTCAAGCATCTGA 1026 0.4181 MGNPTSMVETVPVGYRFHPTDEELVGHYLKHRLLGDDSGVHNIIAEVDVCKFEPWDLPVMLEFSKVKSDDPEWYFFSPLDLKCTKSMRCNRKTKTGYWKITGKDRNIKTRATNKVIGTKKTLVFYKGCGRRRDKTNWVIHEYHAVTFPNDKRGFVLCRLIKKPEKTGEGGADELIHDEGKPSSHVASDYENNATADRDPDASPEVNLESFFPAPPVAEEYDFLLAQQSPVVTEEAPNFQDFSFLNSFSGDEDSLMELTTEEEGNIDSFLNSILANNDVFIGQETAPAFFDDSTASQSLSKVYNESRETTDTELLSALVKTENSCMGRVFITTPLKHILSSI. 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11339 341 Pfam No apical meristem (NAM) protein 12 143 IPR003441 GO:0003677|GO:0006355
Seca3g11339 341 SUPERFAMILY NAC domain 7 162 IPR036093 GO:0003677|GO:0006355
Seca3g11339 341 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 245 - -
Seca3g11339 341 Gene3D NAC domain 20 167 IPR036093 GO:0003677|GO:0006355
Seca3g11339 341 ProSiteProfiles NAC domain profile. 11 162 IPR003441 GO:0003677|GO:0006355
Seca3g11339 341 MobiDBLite consensus disorder prediction 166 204 - -
Seca3g11339 341 MobiDBLite consensus disorder prediction 166 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11339 Seca-Chr3 261390876 261392747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11339 8 164 NAC Transcription Factor Family AT4G35580 50.307 4.52e-49 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca3g11339 NAM 9.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11339 - - ccaj:109803958 347.821