Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11336 ATGGAGTTGATGCAAGAAGTGAAAGGGTATTCTGATAGCAGAGAAGAGGAAGAGGAAGAGGAAGGAGCTGAAGAAATCATCACAAGAGAAGAAAGCAGCAGGTTAGGGTTATTACACCAGCAACAAGATGCAGCACCTTCCAATTTCATCAATCAAACAAAACAGCTAGACTTCATGGAATTGTCACTGGGGAACAACAAGGATGCTAGTGATGAAGTTTATGGCCATGCAACTGCTAGTTCTTCTGCCAACAACAGTAACCAACAGCCTCAGCCTACTGAGAAAGAGCACATGTTTGATAAAGTTGTGACACCAAGTGATGTGGGGAAGCTCAACCGCTTGGTGATACCAAAACAACATGCTGAGAAGTATTTCCCCCTTGATTCCTCAGCCAATGAGAAAGGCCTTCTTCTCAATTTTGAAGACAGAAATGGGAAGTTGTGGAGGTTCAGGTACTCTTATTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGATGGAGCAGATTTGTGAAGGAGAAGAAGCTTGATGCTGGTGACATTGTGTCATTCCAGAGAGGTGTTGGGGAATTGTACAGGCATAGATTGTACATAGATTGGAGGAGAAGGCCTAATCATGGCCCTGATCCCTCAACCACACTCTTCACACCTTTCTTTCTTCCCAATCAGCCTCACTTGTCACAGTACTCCATCAGGTGGGGTGCCACTGGCAGATTGTACTCCCTTCCTTCCCCACAACCACCAAGGCAGCAGCAGCAGCATGACCCTTTGCATCACCTCAATTACAACAACAACAACCATATGTATCCTTTTCATCACCATGGTGGTGGAAGTCACCACCACTACAATTATCATGATCTCAATTCAGGATCTGGGTCAGTCTATTACCTGAGGTCAGCACCATCAATGCCAATGGCTGATCAAACCTTGACAAGGCAACAACAACAACAACAACAAGGAGGAAATAGTAATATTAATGCCCCAATGATCATTGATTCTGTTCCAGTTGCTCATCATCATCATCACCAATATCACCATGGTGGTAAGAGTGGTTCTAGTAGTGGCAGTAGTACTACAAAACGGCTAAGACTATTTGGGGTGAACATGGAATGTGCTTCTTCACAGCCTGAAGACCCCAAATGTTGTAACTTGTTGTCTTCAACTTCAGTAGCACACACAATTTCACCATCCGGAAGGTTTGGGGATCAGAGAGGAGAAGCTTCAATGCTTTTTGATTTAGACCCCTCTTTGCAATACAGGCAGTGA 1266 0.4455 MELMQEVKGYSDSREEEEEEEGAEEIITREESSRLGLLHQQQDAAPSNFINQTKQLDFMELSLGNNKDASDEVYGHATASSSANNSNQQPQPTEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSANEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELYRHRLYIDWRRRPNHGPDPSTTLFTPFFLPNQPHLSQYSIRWGATGRLYSLPSPQPPRQQQQHDPLHHLNYNNNNHMYPFHHHGGGSHHHYNYHDLNSGSGSVYYLRSAPSMPMADQTLTRQQQQQQQGGNSNINAPMIIDSVPVAHHHHHQYHHGGKSGSSSGSSTTKRLRLFGVNMECASSQPEDPKCCNLLSSTSVAHTISPSGRFGDQRGEASMLFDLDPSLQYRQ. 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11336 421 SMART B3_2 99 204 IPR003340 GO:0003677
Seca3g11336 421 Pfam B3 DNA binding domain 99 203 IPR003340 GO:0003677
Seca3g11336 421 MobiDBLite consensus disorder prediction 338 358 - -
Seca3g11336 421 MobiDBLite consensus disorder prediction 306 326 - -
Seca3g11336 421 FunFam B3 domain-containing protein 92 213 - -
Seca3g11336 421 CDD B3_DNA 97 186 IPR003340 GO:0003677
Seca3g11336 421 SUPERFAMILY DNA-binding pseudobarrel domain 95 187 IPR015300 -
Seca3g11336 421 MobiDBLite consensus disorder prediction 1 26 - -
Seca3g11336 421 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 43 377 IPR044800 GO:0003700
Seca3g11336 421 Gene3D - 93 208 IPR015300 -
Seca3g11336 421 MobiDBLite consensus disorder prediction 69 98 - -
Seca3g11336 421 ProSiteProfiles B3 DNA-binding domain profile. 99 204 IPR003340 GO:0003677
Seca3g11336 421 MobiDBLite consensus disorder prediction 75 93 - -
Seca3g11336 421 MobiDBLite consensus disorder prediction 244 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11336 Seca-Chr3 261372772 261374352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11336 91 374 RAV Transcription Factor Family AT2G46870 49.825 5.84e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca3g11336 B3 1.8e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11336 K09287 - gmx:100778733 485.723