Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11333 ATGTTTCCTCTTGTTACTACTATTAGTTTTGGACTTCTTTTGTTCTTGCCTTGTTCCCTCCAAGTGCAAAGAAAATTAGTGGAACCTCCTTTGTTTCCAAATTCTTGCAATGAAACATGTGGGAAACTGCATGTTCCTTTTCCATTCTATGTTAATACTTCTTGTGTGTCAATGTCTAGTGCTTTCCACCTCTCTTGCTCAAATTCCTCTGCCCTTTTGCTCAAAATTGGCTTAGAAAACTACCCAGTTTTGGAATTCTTCTCAGATGGTTTGTTAGTGGACTTTCCAGGAACATCATCCTGTCGCCAATACAATGACTTGAATTCATTTGGTAAAGGTTTTGCAGGAAAGGGCTATTTTGGGGTCTCAGTTGACAATGTTATTGGCCTCTATGATTGTGAGGATTCTTCCCTGTGTAAAGCAGATTGTGAAACAATTGACCTTCCTGGTTGTGATGGAAGTGGTGGTGGCTCCCTTGGTTGCTGCTATCCACTCTCTGACCATAGCATATGGCATGTTGGTGAAGGCTTTTCAGTGTTTTCTCAGTTTGGATGCAGGGGGTTTTCTAGTTGGGCTGTTTTGAGAGGGTCATATTCAGGAAAACGTGGGGTCAAATTGGAATGGGCTATTCCTAGGAACTCATCCAAGGAAGCTTGTGCAAAGAATGCAGACATGGCTAATGCTACAGCAATTGAAGGTGGAGTGAGGTGTGTTTGTCAAGATGGATATGTTGGTGATGGGTTTGCTAATGGAACAGGATGCTTGCAATCCTGTATCAAGGATGGACAGGAAGCATATGGAAGTGACTGCTACATCAAAAGACATGATCAAAGGAAAATGGTTATCATTGCAGGAATCCTTGGTCCAGTTCTTATTGTTGCCTCCTTGGTTGCACTATTTTACCTTCTTAAAAGAAAAGAAAAACCAGGAATGTTTGATGCTGAGCAGGCTTATTATCACAACATTTCATTCCGCAAAGCTTGTAGAACTAGACTATTCAGCCACCGTGAGCTAGAGGAAGCCACCAATGGTTTTGAAGAGGATCAGAAACTTATGCATGGCAGTAATGGGACAATGTTTGCTGGAGTTCTTGGTGATGGATCTCACATAGCTGTCCACAAGTTAAAATGTGAGAATGAGAAAGACATAATTCAAGTCTTGTCACAAATTGAGGTTCTATCTGCTGTTGTACATAGGAATATTGCTTCCCTTCTTGGATGCTGTATTGACTCTGGCCACACTCCTCTAGTTGTCTATGAGTATCCTGCAAATGGTACCTTAGAGGAGCATTTAAGCCAAAGAAAAGGACAGAATTTAGACTGGTATAGGAGATTGACTATTGCTGCAGAAACAGCTAGTACTATTGCACTATTACATTATGAAATGTCTCCTCCCATATTTCACCATAACCTTAAGTCTAGCTGCATCTTCCTAGATGATGATTTTTCTGTCAAGATTGCAGGATTTGGACTAATTAATTCAGATTTTACTACTTATGATTCTCACTTGTACAAGAACCGTGAATGCTTGCGCCTGTTCAAAAATGATGTCTATGACATGGGAGTGGTGCTTATTGAGATTATCTCAGGCTCAAATCAATTGGACTCACCAACTTCAGCCTTGCAGAAAATAAGGGCTGGAAAGCTAGAAGAAATTGTTGATCCACTTCTTTACTATCATGAACAACCACACCATCGCCAAGAGCAAATACAAATAATTGCAGACCTTGCAACAAGATGCCTGCTATTTGGTGCTGATGGAAAGCTAGGAATGATTGATGTTGCTAGGGAGTTGGTACATATAACTAAAGAGAGTCCTGATGGAGGAACTATGAGAGGACCTGCATTGGAAGAGACATTCTCAAATTCAAGCCTTCTTCAAATGATATCAATGTCTCCTGATTCTATGAATGTTCCTTGA 1920 0.4062 MFPLVTTISFGLLLFLPCSLQVQRKLVEPPLFPNSCNETCGKLHVPFPFYVNTSCVSMSSAFHLSCSNSSALLLKIGLENYPVLEFFSDGLLVDFPGTSSCRQYNDLNSFGKGFAGKGYFGVSVDNVIGLYDCEDSSLCKADCETIDLPGCDGSGGGSLGCCYPLSDHSIWHVGEGFSVFSQFGCRGFSSWAVLRGSYSGKRGVKLEWAIPRNSSKEACAKNADMANATAIEGGVRCVCQDGYVGDGFANGTGCLQSCIKDGQEAYGSDCYIKRHDQRKMVIIAGILGPVLIVASLVALFYLLKRKEKPGMFDAEQAYYHNISFRKACRTRLFSHRELEEATNGFEEDQKLMHGSNGTMFAGVLGDGSHIAVHKLKCENEKDIIQVLSQIEVLSAVVHRNIASLLGCCIDSGHTPLVVYEYPANGTLEEHLSQRKGQNLDWYRRLTIAAETASTIALLHYEMSPPIFHHNLKSSCIFLDDDFSVKIAGFGLINSDFTTYDSHLYKNRECLRLFKNDVYDMGVVLIEIISGSNQLDSPTSALQKIRAGKLEEIVDPLLYYHEQPHHRQEQIQIIADLATRCLLFGADGKLGMIDVARELVHITKESPDGGTMRGPALEETFSNSSLLQMISMSPDSMNVP. 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11333 639 Pfam Wall-associated receptor kinase galacturonan-binding 36 86 IPR025287 GO:0030247
Seca3g11333 639 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 33 602 IPR045274 GO:0007166
Seca3g11333 639 Gene3D Phosphorylase Kinase; domain 1 316 421 - -
Seca3g11333 639 FunFam Putative WAK-related receptor-like protein kinase family protein 423 611 - -
Seca3g11333 639 Gene3D Transferase(Phosphotransferase) domain 1 423 610 - -
Seca3g11333 639 FunFam probably inactive receptor-like protein kinase At2g46850 317 421 - -
Seca3g11333 639 ProSiteProfiles Protein kinase domain profile. 345 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11333 639 Pfam Protein tyrosine and serine/threonine kinase 348 532 IPR001245 GO:0004672|GO:0006468
Seca3g11333 639 SUPERFAMILY Protein kinase-like (PK-like) 328 598 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11333 Seca-Chr3 261328332 261331873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11333 32 601 Receptor kinase-like Gene Family AT2G23450 31.260 2.09e-68 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-3 Seca3g11333 PK_Tyr_Ser-Thr 6.9e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11333 - - gmx:100810557 994.571