Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11331 ATGGATGCATACTCCTCTGGCGAAGAAGTGATTGTTAAGACAAGAAAACCATATACAATAACAAAGCAAAGAGAACGATGGACAGAGGAGGAGCATAATCGGTTTCTTGAAGCTCTGAAGCTACATGGGCGAGCATGGCAGCGCATAGAAGAGCATATAGGAACAAAGACTGCCGTGCAAATCAGGAGCCATGCACAAAAGTTCTTTACAAAGTTGGAGAAAGAGGCCCTTGTAAAGGGTGTTCCAGTTGGACAAGCTCTTGACATAGACATTCCCCCTCCACGGCCCAAAAGAAAACCAAACAATCCCTATCCTCGGAAGAAGAGTGTTGGTACCACAACGTTACATAGTGGAGCAAAGGATGGAAAACTCAATTCAGTTGAATCTTCACATGTTAAACAAGCATTGGACTTGGAAAAAGAACCACTTCCAGAGAAACATAATTTAGACCAAGGGCCTACAACTGTAAAAGAAAATAATGATGGAAACTGCTCAAAAATATTTACTGTTTTCCAGGAGGTACCCTGTTCCTCTATATCTTCGGCAAACAAGAGTTCAATATCAATGTCAATGGCACTGGGAAATTCAGGCACCTTAAATGAGATTACACCTTCAGTGAACGAGGTAATAGCACGAGATGGAGCAAATGAATCTTTTATCACCATTGAACTTGAAAATCGGAATTTGGAGAACGATGATGGAAAACAGACTAATGGCAGTAGTAAAGAGTCCAAGTTGGAGAATTCTGATGCTTCTCTGAAATTGGTTCAAAATAAGAAAACAGAGGGTCTTAATTGTGCATTAACAATGGATGGGATGCAAGGCAATCAGAATTACCCAAGACATGTTACTGTGCACGTTGTTGATGGGAACCTTGGAACAAGTCCTCAAAATTCATCCAAAGATATTCGAGACTCCATATTTCAGCCACTAGGAGGGGTTAATGGGCAACCTAATCTTTTCACCAATTCAGCTCCATCAAACACAAGTGAAAGTCAAAATAACACAGCACGGTCTTCTATTCATCAATCATTTCTTCCTTATCCTCCTCCCTTCACACAACATAATCAAGATGATTACCAATCATTTCTTCACATGTCCTCCACATTTTCAAGTCTGATTGTCTCTACCTTGCTGCAAAACCCAGCAGCCCATGCTGCAGCAAGTTTTGCTGCTACATTTTGGCCCTATGCAAATCCAGAAACTTCAGCGGATTCTCCTAGGTTCTCACAAGGAGCTTTTCCATCTAGACAAATTGGCTCCCCTCCAAGTGTGGCAGCCATTGCAGCTGCTACAGTAGCTGCTGCAACTGCATGGTGGGCAGCTCATGGATTGCTTCCTTTGTGTGCACCTCCCCATTCTGCTTTTGCCTGTCCTCCTGCATCAGTGACTGCAGTTCCATCAATGACTACTGGCGAAGCACCAGAACCAAAGACAGAGCAAGGAAAAACTAATCTACAAAATCCTCCTCTGCAAGACCATATACTGGATCCAGAACACTCGGAAGCTCAGCAGGCTCAACATTCAGCTTCTAAGTCACCAGCTGTTACATCATCAGATTCTGAGAGTGGAGGTGCCAAGTTAAATACTTCATCAAAGGCTACTGATCAAGAGATGAACAAAGCTGTTTCTGAGCACATTGATTCCAGCAAAACGAAGGGCAGAAAACAGGTTGACCGTTCCTCATGTGGTTCCAACACAACCTCTAGCAGCGAAGTGGAGACTGATGCATTAGAGAAGGATGGGAAAGGAAAGGAAGAGCCTGAAACACCTGATGCTAACCATTTAGCCACTGAATCTAGTAATCGTCGTAGTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAGGAGGTATCTGAAGAGGGGCGACTGGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCTCAAAGCTTTTCACCTCCGCATGTTTTGAAAAATAAGGATCATCAAAAGGACAACAACATGGATAACATGCAAAACACAGATGAAGTCCTCGACAGCAAAAAATGCAGTTGTAATTTTGAAGGAATGCAGAATAACTTGCTATTTGTAGAAAATAAGGAGGAGGGACTGTTAACCATAGGGCTTGGACAAGGAAAGCTTAAGACTCGTCGAACAGGCTTTAAACCCTACAAAAGATGTTCAATGGAGGCCAGGGAAAACAGGGTTGGAACGACCAGCAACCAAGTTGAAGAGAAATGTTGTAAGAGAATACGCTTGGAAGGGGAGGCTTCAACTTGA 2244 0.4314 MDAYSSGEEVIVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEALVKGVPVGQALDIDIPPPRPKRKPNNPYPRKKSVGTTTLHSGAKDGKLNSVESSHVKQALDLEKEPLPEKHNLDQGPTTVKENNDGNCSKIFTVFQEVPCSSISSANKSSISMSMALGNSGTLNEITPSVNEVIARDGANESFITIELENRNLENDDGKQTNGSSKESKLENSDASLKLVQNKKTEGLNCALTMDGMQGNQNYPRHVTVHVVDGNLGTSPQNSSKDIRDSIFQPLGGVNGQPNLFTNSAPSNTSESQNNTARSSIHQSFLPYPPPFTQHNQDDYQSFLHMSSTFSSLIVSTLLQNPAAHAAASFAATFWPYANPETSADSPRFSQGAFPSRQIGSPPSVAAIAAATVAAATAWWAAHGLLPLCAPPHSAFACPPASVTAVPSMTTGEAPEPKTEQGKTNLQNPPLQDHILDPEHSEAQQAQHSASKSPAVTSSDSESGGAKLNTSSKATDQEMNKAVSEHIDSSKTKGRKQVDRSSCGSNTTSSSEVETDALEKDGKGKEEPETPDANHLATESSNRRSRSVSNLTDSWKEVSEEGRLAFQALFSREVLPQSFSPPHVLKNKDHQKDNNMDNMQNTDEVLDSKKCSCNFEGMQNNLLFVENKEEGLLTIGLGQGKLKTRRTGFKPYKRCSMEARENRVGTTSNQVEEKCCKRIRLEGEAST. 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11331 747 MobiDBLite consensus disorder prediction 467 616 - -
Seca3g11331 747 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Seca3g11331 747 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Seca3g11331 747 MobiDBLite consensus disorder prediction 320 349 - -
Seca3g11331 747 FunFam protein REVEILLE 6 isoform X1 26 74 - -
Seca3g11331 747 MobiDBLite consensus disorder prediction 133 147 - -
Seca3g11331 747 MobiDBLite consensus disorder prediction 539 558 - -
Seca3g11331 747 MobiDBLite consensus disorder prediction 106 132 - -
Seca3g11331 747 MobiDBLite consensus disorder prediction 559 573 - -
Seca3g11331 747 SMART sant 23 71 IPR001005 -
Seca3g11331 747 PANTHER SWI/SNF COMPLEX-RELATED 7 644 - -
Seca3g11331 747 MobiDBLite consensus disorder prediction 594 615 - -
Seca3g11331 747 MobiDBLite consensus disorder prediction 502 538 - -
Seca3g11331 747 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Seca3g11331 747 MobiDBLite consensus disorder prediction 574 593 - -
Seca3g11331 747 MobiDBLite consensus disorder prediction 230 250 - -
Seca3g11331 747 CDD SANT 26 69 IPR001005 -
Seca3g11331 747 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Seca3g11331 747 MobiDBLite consensus disorder prediction 467 491 - -
Seca3g11331 747 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Seca3g11331 747 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Seca3g11331 747 Gene3D - 26 73 - -
Seca3g11331 747 MobiDBLite consensus disorder prediction 86 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11331 Seca-Chr3 261290568 261305140 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca3g11331 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11331 K12133 - gmx:100271888 1144.03