Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11328 ATGGCAAAAACAGAGCAAATGATCCATGTTGCACATGTTGATTCAAAAGATAATCAACAAGAAATATTAGAAGAAAAAAGCTTCACCTATGCTATGCATCTGGTGAACTCTAGTGTGCTTTCCATGGCCATGCACTCAGCTCTTGAGCTTGGCATTTTTGACATCATAGACAAAGCAGGTGTGAATGCCAAGCTGTCTGCCAAGGACATTGCAGCCCATCTTCCTTGCAAGAATCCAGATGCAGCCACAATGCTAGATCGTATCCTCAGGCTTCTAGCAAGTCACTCCGTGATTGATTGCACTATTGTTGATGATGAACAAGGTCCTCCACCACATTTGCAGCGACTCTATAGTATGGCCCCTGTTGGCAAATACTTTGCTTGCAATGGTGGTGGTGGCTCACTTGGGCCTTTGATGGTTTTGACTCAAGACAAGGCCATCCTTCAGAGTTGGTACCAACTGAAAGATGCAATTTTGGAAGGAGGCATTCCATTCAACAGGGTCCATGAAAAGCATGTATTTGAGTATTCAGACTTGAACCCAAGCTTCAATCAGCTTTTCATGGCTGCAATGACCAATCGTGCAACTTTAATTATGAAGAAGATTCTTGAATATTACAAGGGGTTTGAGCACATCAATAGGCTAGTGGATGTTGGGGGTGGCCTTGGGGTCACTATTAACATAATCACCTCTAAATACCCTCACATTCAGGGTATCAATTTTGACTTACCTCATGTAGTGGAACATGCCTCTCCCTATCCTGGTGTTGAACACGTGGGAGGGGATATGTTTGAAAGTGTACCAAAAGGAGATGCCATTTTGATGATGTGTGTACTTCATGATTGGAGTGATGAATACTGCTTGAAGGTGTTGAAGAACTGCTATGATGCTATTCCTAATGATGATAAGGTGATTGTTGTGGAGGGAGTTCTTCCATTTGAACCTGAGACTAGAGCTTCAGTGAAAAGCATTTCTCAATTTGATGTTCTGATGATGACTACAAACCCAGGAGGGAAGGAGCGAAGTGAAGAAGAATTCATGGCATTGGCAAAAGGAGCTGGATTCAGTGGTGTTAGATATGCATGCTTTGTCTGTGACGTCTGGGTTATGGAATTCTTCAAGTAG 1125 0.4284 MAKTEQMIHVAHVDSKDNQQEILEEKSFTYAMHLVNSSVLSMAMHSALELGIFDIIDKAGVNAKLSAKDIAAHLPCKNPDAATMLDRILRLLASHSVIDCTIVDDEQGPPPHLQRLYSMAPVGKYFACNGGGGSLGPLMVLTQDKAILQSWYQLKDAILEGGIPFNRVHEKHVFEYSDLNPSFNQLFMAAMTNRATLIMKKILEYYKGFEHINRLVDVGGGLGVTINIITSKYPHIQGINFDLPHVVEHASPYPGVEHVGGDMFESVPKGDAILMMCVLHDWSDEYCLKVLKNCYDAIPNDDKVIVVEGVLPFEPETRASVKSISQFDVLMMTTNPGGKERSEEEFMALAKGAGFSGVRYACFVCDVWVMEFFK. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11328 374 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 132 372 IPR029063 -
Seca3g11328 374 FunFam Caffeic acid O-methyltransferase 127 374 - -
Seca3g11328 374 Gene3D - 10 126 IPR036388 -
Seca3g11328 374 Gene3D Vaccinia Virus protein VP39 129 374 IPR029063 -
Seca3g11328 374 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 32 374 IPR016461 GO:0008168
Seca3g11328 374 PANTHER O-METHYLTRANSFERASE 31 359 IPR016461 GO:0008168
Seca3g11328 374 Pfam Dimerisation domain 42 93 IPR012967 GO:0046983
Seca3g11328 374 Pfam O-methyltransferase domain 151 356 IPR001077 GO:0008171
Seca3g11328 374 PIRSF O-mtase 8 374 IPR016461 GO:0008168
Seca3g11328 374 FunFam Caffeic acid 3-O-methyltransferase 11 126 - -
Seca3g11328 374 SUPERFAMILY "Winged helix" DNA-binding domain 25 128 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11328 Seca-Chr3 261249781 261252191 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11328 21 374 Monolignol Biosynthesis Gene Families AT5G54160 50.282 2.84e-131 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11328 K13066 - gmx:100788873 608.986