Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11325 ATGGCTCCTTCATTAGAAACCAATAACGGTGAAATGAAGCAGCTTAAACATGAAGGAGGAGGACATGTCCAAGAAGGAGAAGAAGATGGCATCATATTTGCATTGAACATGAGTACTTCTGTGATACTTCCCCTGGCAGTGAGGACTGCAGTTGAGCTGGGAATCTTCGATATACTAGCCGCCAGAGCAGGTGAGGGTCTCTCAGCAGAGGACATAGCAGTTAAGGTTGGGTCAAAGAACCCAGAAGCACCCTCAATGTTGGATCGTCTTCTGAGGTTGTTGACTAGTCACTCAATGCTATATTGTTCTCTTGCTGAACCTGAAGGTGAAGAACAGGGGAATGCTTCTTCTTCTTCTTCTCAGAGACTCTATAGGCTCGCCCCTAGATCCAAGTACTTTGTCACCGATGCTGATGGTGTGTCATTTGGACCTACACTCAATTTACCTCTTGACAAAGTCTTCTTGGAAAGCTGGACTGAACTGAAAGGAGCAATATTGGAAGGAGGTATACCATTCAATAGGGTTTTTGGCATGCACGCATTTGAGTATCCAAGTGTAGATCCGAGGTTCAATGAAGTTTTCAACAAAGCTATGGTCAATTGTACCACTATAGTTATGAAGAGGGTTCTTGAGTTCTATGAAGGTTTTGAGCACATCAACAAATTGGTGGATGTTGGAGGTGGTCTTGGGATCAATCTCAAGCTCATCACTTCAAAATATCCCCATGTCCAAGGTGTTAATTTTGATTTGCCTCATGTTATAGAGCATGCCCCAACATATGCAGGTGTGACACATGTGGGAGGAGATATGTTTGAGAGTGTTCCTAATGGAGATGCTATTTTTATGAAGTGGATACTTCATGACTGGAGTGATGAGCTCTGCTTGAAGTTGTTGAAGAATTGCCATAAAGCTATTCCTAGTGATGGAAAAGTGATTGTTGTTGACTATATTATTCCTGTTTTGCCTGAGAGTACAACTATGGCCAAAATTAGCTTCCAAGCCGACCTCTTAATGATGACTCAAAACCCAGGAGGGAAAGAGCGAACCCAAAATGAATTCATGGCATTGGCATTAGGTTCTGGATTTAGTGGTATTAGATTTGTCTGCTTTGTCTCTGGCTTCTGTGCTAATTCATTAGAAAATAATAAAGGTGAAGCAAAGCAAGGAGGCCATGTGCAAGAAGATGATGGCATTATTTTTGCCATGAGCATGATGTCTTCTATTGTATTTCCACAAGCGGTTCGGTCAGCAGTTGAGCTTGGTATCTTTGACATCCTAGCCAAAGCAGGTGAAGGTGTCAACCTCTCTTCAAAGGACATTGCAATTCAAATTGCCTCAAAGAACCCAGAAGCACCCATAATGCTAGATCGTCTCCTAAGATTATTGGCTAGTCACTCTATGCTTTATTGTTCACTTACTGAAGATCATCAAGGGCATGAGCCTCCTCAAAGGCTCTATAGGCTCGCCCCTGCATCCAAGTACTTTGTGACTGATGTTGATGATAATAATTTTTTCGAATTGACTTATAGGACTGAACTTAAAGGAGCAATCTTGGAAGGAGGTATTCCTTTCAACAGGGTTCATGGAATGAATGCATTTGAGTATCCAAATGTGGATCCTAGGTTCAATGATGTTTTCAACAAAGCTATGCTCAATATTACCACTATACTCATGAAGAGGGTTCTTGAGTTCTACAAAGGTTTTGAGAACATCAATAAACTGGTGGATGTTGGTGGAGGTCTTGGAATCAATCTCAAGCTGATCACTTTAAAATATCCTCATGTTCAGGGTGTTAATTTTGATTTGCCTCATGTCATAGAGCATGCCCCTACATATGTTGGCGTGACACATGTGGGAGGGGATATGTTTGAGAGTGTGCCTAATGGAGATGCCATTTTTATGAAGTGGATACTTCACGATTGGAGTGATGAACACTGTTTAAAGTTGTTGAAGAATTGCCACAAAGCTATTCCAAGTGATGGAAAAGTGATTGTTGTGGACTCAATTATTCCCGTTTTGCCAGAAAGTACACCCATTGCCCAGAATGGTTTTCAAGCTGATCTTCTAATGATGACTCAAAATCCAGGAGGGAAAGAGCGAACCCAAAATGAATTCTTAGAATTGGCATTACAATCTGGATTTAGTGGTATTAGACACGTTTGTTGTGTCTCTGGTTTATGGGTTATGGAGTTCTTCAAGTAG 2202 0.4142 MAPSLETNNGEMKQLKHEGGGHVQEGEEDGIIFALNMSTSVILPLAVRTAVELGIFDILAARAGEGLSAEDIAVKVGSKNPEAPSMLDRLLRLLTSHSMLYCSLAEPEGEEQGNASSSSSQRLYRLAPRSKYFVTDADGVSFGPTLNLPLDKVFLESWTELKGAILEGGIPFNRVFGMHAFEYPSVDPRFNEVFNKAMVNCTTIVMKRVLEFYEGFEHINKLVDVGGGLGINLKLITSKYPHVQGVNFDLPHVIEHAPTYAGVTHVGGDMFESVPNGDAIFMKWILHDWSDELCLKLLKNCHKAIPSDGKVIVVDYIIPVLPESTTMAKISFQADLLMMTQNPGGKERTQNEFMALALGSGFSGIRFVCFVSGFCANSLENNKGEAKQGGHVQEDDGIIFAMSMMSSIVFPQAVRSAVELGIFDILAKAGEGVNLSSKDIAIQIASKNPEAPIMLDRLLRLLASHSMLYCSLTEDHQGHEPPQRLYRLAPASKYFVTDVDDNNFFELTYRTELKGAILEGGIPFNRVHGMNAFEYPNVDPRFNDVFNKAMLNITTILMKRVLEFYKGFENINKLVDVGGGLGINLKLITLKYPHVQGVNFDLPHVIEHAPTYVGVTHVGGDMFESVPNGDAIFMKWILHDWSDEHCLKLLKNCHKAIPSDGKVIVVDSIIPVLPESTPIAQNGFQADLLMMTQNPGGKERTQNEFLELALQSGFSGIRHVCCVSGLWVMEFFK. 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11325 733 SUPERFAMILY "Winged helix" DNA-binding domain 27 137 IPR036390 -
Seca3g11325 733 Gene3D Vaccinia Virus protein VP39 191 370 IPR029063 -
Seca3g11325 733 Gene3D - 409 561 IPR036388 -
Seca3g11325 733 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 402 733 IPR016461 GO:0008168
Seca3g11325 733 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 139 370 IPR029063 -
Seca3g11325 733 Gene3D - 42 209 IPR036388 -
Seca3g11325 733 FunFam Caffeic acid 3-O-methyltransferase 14 133 - -
Seca3g11325 733 SUPERFAMILY "Winged helix" DNA-binding domain 394 498 IPR036390 -
Seca3g11325 733 Gene3D Vaccinia Virus protein VP39 543 723 IPR029063 -
Seca3g11325 733 FunFam Caffeic acid O-methyltransferase 491 733 - -
Seca3g11325 733 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 511 731 IPR029063 -
Seca3g11325 733 Pfam O-methyltransferase domain 158 363 IPR001077 GO:0008171
Seca3g11325 733 Pfam O-methyltransferase domain 512 715 IPR001077 GO:0008171
Seca3g11325 733 Pfam Dimerisation domain 414 463 IPR012967 GO:0046983
Seca3g11325 733 Pfam Dimerisation domain 46 95 IPR012967 GO:0046983
Seca3g11325 733 PANTHER O-METHYLTRANSFERASE 37 367 IPR016461 GO:0008168
Seca3g11325 733 FunFam Caffeic acid O-methyltransferase 134 380 - -
Seca3g11325 733 FunFam Caffeic acid 3-O-methyltransferase 380 495 - -
Seca3g11325 733 MobiDBLite consensus disorder prediction 1 23 - -
Seca3g11325 733 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 35 383 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11325 Seca-Chr3 261232072 261239870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11325 391 733 Monolignol Biosynthesis Gene Families AT5G54160 50.425 3.28e-121 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11325 K13066 - atri:130806785 656.366