Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11323 ATGCCATTCCTGCAGATGCTTCAGAGTGTGGAATCCCCACAGTTTTTCCCTTTGAAAGAACCAAGCTTTCAAACACTTTTGAGGCTGCAGCATCTCAAGAAACCATGGGAAGGGATAGCCTATATCCCCAGCATGGAGACCCAACAACAAGTTCAAGCAGCAGCATTAGAGCTAGAGAGCTGTGTGACACATGACATGTTGGAGATGCAATCACCAGTGAAATCAGAAAGCAATGAGCTTCAACACCCACGTTCAGCTTCATGTGTTGAGAAACTGAACTGTTATGAGTGCAACCAGGAATTACCACTCAAAACAGCACAAACATGCCCCAAATCTCAGCCACCAGCAACAAGGGAAAAGAGAAAGCGAAAGAGAACAAGACCAACTAAGAACAAGGAAGATGTGGAGAATCAACGAATGACCCACATTGCTGTTGAACGCAACCGACGACGCCAAATGAATGACCACCTCAGTGTTCTAAGGTCCATCATGCCCCCTTCCTATATTCAAAGGGGTGACCAAGCTTCAATCATTGGAGGTGCAATTGATTTTGTGAAGGAGTTGGAGCAGTTGCTTCAATCCCTTGAAGCACAAAAAAGGATAAGGAAAAATGAAGAGGGTGGTTCTTCCAGTGGATTGTCTAAGGCATCATCATCAGTATCATCTGGTTATGGAATGAGGTCATCATCCACTGAAGAAGATGAGGTGAAGGCAGAAAACAAGTCAGATGCAGCAGACATAAAAGTCACCTTGATTCAAACCCATGTGAACCTGAAAATTGAATGCCAAAGGAGACCTGGGCAATTGATAAAGGTCATTGTTGCTTTGGAGGACCTTAGGCTAACCATTCTGCACCTTAACATCACCTCCTCCGAGGCTTCTGTCCTATACTCTCTCAATCTCAAGATTGAAGAAGACTGTAAACTAGGCTCAGCAAATGACATTGCAGAAGCAGTTCATCGTATATTCAGCTTTATTAATTGCAGCTAA 990 0.4394 MPFLQMLQSVESPQFFPLKEPSFQTLLRLQHLKKPWEGIAYIPSMETQQQVQAAALELESCVTHDMLEMQSPVKSESNELQHPRSASCVEKLNCYECNQELPLKTAQTCPKSQPPATREKRKRKRTRPTKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSIMPPSYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKRIRKNEEGGSSSGLSKASSSVSSGYGMRSSSTEEDEVKAENKSDAADIKVTLIQTHVNLKIECQRRPGQLIKVIVALEDLRLTILHLNITSSEASVLYSLNLKIEEDCKLGSANDIAEAVHRIFSFINCS. 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11323 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 204 IPR036638 GO:0046983
Seca3g11323 329 PANTHER TRANSCRIPTION FACTOR FAMA 76 323 IPR044283 GO:0003700|GO:0010052
Seca3g11323 329 MobiDBLite consensus disorder prediction 207 229 - -
Seca3g11323 329 MobiDBLite consensus disorder prediction 106 139 - -
Seca3g11323 329 CDD bHLH_AtFAMA_like 140 206 - -
Seca3g11323 329 Gene3D - 128 212 IPR036638 GO:0046983
Seca3g11323 329 MobiDBLite consensus disorder prediction 203 239 - -
Seca3g11323 329 Coils Coil 185 205 - -
Seca3g11323 329 Pfam Helix-loop-helix DNA-binding domain 138 189 IPR011598 GO:0046983
Seca3g11323 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 188 IPR011598 GO:0046983
Seca3g11323 329 SMART finulus 143 194 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11323 Seca-Chr3 261219621 261222773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11323 6 323 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46810 42.308 2.93e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g11323 HLH 3.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11323 - - gmx:100789928 508.834