Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11320 ATGGTTGAAGTGGAGGAGTTCAATGTAACAATGAAGGAGGAGGAGGAGGAGGAGCAGAATAACAATAACAACAACGATGATGATGATGGTGGCGGCGATGGTGATGGCGATAGTAATGGTGATCGCTCTACGGAGGTGGTTAGGTGGGAGAGGTTTCTGCCACGGATGGTGCTTACAGTGCTGCTTGTCGAAGGAGATCGTTCTACTCGCCAGATCATCGCTGCACTACTCAAAAAATGCAGTTACAGAGTTATTGCTGTTCCTGATGGATTAAAGGCATGGGAGACATTGAAGAGGAAGGCACCTGACCTAGATCTCATATTAACAGAAATGGAGTTGCCAGCAATATCTGGATTTGCACTTCTTTCTTTGATCATGGAGCATGATGTGTGCAAAAATATTCCTGTTATAATGATGTCTTCTCACAATTCAGTTAGCATGGTGTTGAAATGCATGTTAAAAGGTGCAGCTGATTTTCTTATCAAACCTGTTCGGAGAAATGAGCTTACGAACTTGTGGCAGCATGTGTGGAGAAGGCATGCTGAGAAAAAACTTAAAGCTGCCACAGAAGACATTTCTGCAAGCAATCAATCGAGTGGTTCTGTGGATTCCTCACAGAAAAATGATGAATGCAGTGAGAAATTTAGCGAGGCTCAAAGCACATGTACATCACCATTTTTGGAAGCTGAAAGTGCGCACATGGAAAATATGCAGAATCCATCCCAGGTAAAGAGTTCTTCGAAGTTGAGCAACATTGATACAGTGAAGCATGAGGAGTTCACCAAATTTGTAAGTGAAACAGCAAAGCATAATGATGAAACAGGAGAGAGATCAAATACATTTGCACCAGAGGCTGCAAGGTGGAACAAAACTTTTAAATTGACAGATTTAAGGCTAGAGCAAGATCATGGTTCTGCTGAAACTGAAAACAAAGATGAAACTTTTAGAGCTGAGTTAAGCACAAACAAGGCTAGCATTAGTACCAAGATACATGGATGCAGTCATGAGCTGGAAGAGCCTTCTAGAGGAGCTATTAATTTGATTGCCACATTTGAAAATCCTCCTAAGCACACTAATGAAAACTGTTGTCTTGATGGTGGTAACATAACCAAGTTTGATTATGATACACAATTGGAGCTTTCTTTAAAAAGAGACTTTCCTGGCAGCTCATGTAAACAAGCAAGTGAAGCAACTGAGGAATGGCGAAGATTGAACCATTCAAATACTTCCGCCTTTTCTTGGTATAGTGGTAGTAAGCTGTTTCAATCGCTTTTTTCAACACCACCAAATACATCTGCTATAGTAAACAATTCCAATCGGGATTCGTGTGAATCTCATAAATCATCTGGAATTACTGCTGTTAATGATTGTCAGTATGATGGCTCAAATCAAAATCAAGAGAATGTGACCAGTAAGATCTTTACTTCTGTGTTTCCTGCTCAACCTGTTCTACATCCCACACGGAATGTGAAACCAGACTGCCAGAAAGAGAGTTCTCCTTTTCCCTCAAGTACCTCCTCCCAGTCCAATGCTGAAACTCACAACTCAGACCAACATAATCACAGGTCCAATGATGCTAATTATACGTGTCCATATGATAAAATGAATTTGGATCATGCAAAACATGATTCTTCTGCAACTGGTCAGAGTGCTAATAATTTTTGCAATGATGCTGCAAATCATATTAATAGTGCATATGGAAGCATAGACTGTGGAAATGATGGAAAAGCTACTTCAACTATGATAGCTGAGAACAACCCAGAAATTTTTAGTGGTGGTGGTTGCCAAAATTATGATGGATTTAGATTGATAGATTCTCATCGCTCCAGTCAAAGAGAAGCAGCTTTAACAAAATTTCGGCTGAAGCGGAAAGAGAGATGTTATGAGAAAAAGGTTCGATATCAAAGCCGGAAAAGACTGGCAGAGCAGCGCCCTCGGGTGAAAGGACAGTTTGTACGCCAAGTACACAATGATCATCCAGTAGCTGATGCTGGTGATGCTGGTGGTGATTCCTGA 2016 0.4097 MVEVEEFNVTMKEEEEEEQNNNNNNDDDDGGGDGDGDSNGDRSTEVVRWERFLPRMVLTVLLVEGDRSTRQIIAALLKKCSYRVIAVPDGLKAWETLKRKAPDLDLILTEMELPAISGFALLSLIMEHDVCKNIPVIMMSSHNSVSMVLKCMLKGAADFLIKPVRRNELTNLWQHVWRRHAEKKLKAATEDISASNQSSGSVDSSQKNDECSEKFSEAQSTCTSPFLEAESAHMENMQNPSQVKSSSKLSNIDTVKHEEFTKFVSETAKHNDETGERSNTFAPEAARWNKTFKLTDLRLEQDHGSAETENKDETFRAELSTNKASISTKIHGCSHELEEPSRGAINLIATFENPPKHTNENCCLDGGNITKFDYDTQLELSLKRDFPGSSCKQASEATEEWRRLNHSNTSAFSWYSGSKLFQSLFSTPPNTSAIVNNSNRDSCESHKSSGITAVNDCQYDGSNQNQENVTSKIFTSVFPAQPVLHPTRNVKPDCQKESSPFPSSTSSQSNAETHNSDQHNHRSNDANYTCPYDKMNLDHAKHDSSATGQSANNFCNDAANHINSAYGSIDCGNDGKATSTMIAENNPEIFSGGGCQNYDGFRLIDSHRSSQREAALTKFRLKRKERCYEKKVRYQSRKRLAEQRPRVKGQFVRQVHNDHPVADAGDAGGDS. 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11320 671 MobiDBLite consensus disorder prediction 484 530 - -
Seca3g11320 671 Pfam CCT motif 612 654 IPR010402 GO:0005515
Seca3g11320 671 MobiDBLite consensus disorder prediction 190 206 - -
Seca3g11320 671 Gene3D - 56 301 - -
Seca3g11320 671 SUPERFAMILY CheY-like 58 182 IPR011006 -
Seca3g11320 671 MobiDBLite consensus disorder prediction 188 216 - -
Seca3g11320 671 MobiDBLite consensus disorder prediction 1 34 - -
Seca3g11320 671 MobiDBLite consensus disorder prediction 639 665 - -
Seca3g11320 671 Coils Coil 4 24 - -
Seca3g11320 671 SMART REC_2 58 173 IPR001789 GO:0000160
Seca3g11320 671 Pfam Response regulator receiver domain 60 171 IPR001789 GO:0000160
Seca3g11320 671 ProSiteProfiles Response regulatory domain profile. 59 177 IPR001789 GO:0000160
Seca3g11320 671 MobiDBLite consensus disorder prediction 1 43 - -
Seca3g11320 671 MobiDBLite consensus disorder prediction 639 671 - -
Seca3g11320 671 PANTHER TWO-COMPONENT RESPONSE REGULATOR 59 426 IPR045279 GO:0009736
Seca3g11320 671 ProSiteProfiles CCT domain profile. 612 654 IPR010402 GO:0005515
Seca3g11320 671 MobiDBLite consensus disorder prediction 493 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11320 Seca-Chr3 261180270 261185886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11320 596 657 Response Regulator Gene Family AT5G24470 70.312 1.18e-20 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Seca3g11320 Response_reg 2.8e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11320 K12130 - gmx:100791698 771.155