Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11319 ATGGCATTGGCTCTGTTACCTTCTTCTTCCTCTTCCTCTTCCTCTTCGGTGCTGAGCCTGAAACACAAACCCCGATTTCTAGCTTCAGCCAAACGATTCGTTTCGCATTTCTGGCATCCAAGGTATCCATGCTTGGTACTACTGCCGACAACTCTAGAACCTTCTTCTTCTCTAAGGAAAGCTAGGCTTTGTGTGGCAGCGGTGGTTTCAGAAGGGATTAACGGAGAAGAATCCCTGGACACAGAAAACGATGACGTTTTCCAAGAGGAAAAAGAAGAACGGCGGAGTAAAGTTCCCGCTCCCAGACCGTGTGAATTGTATGTGTGCAATCTCCCCAGAAGCTATGACGCAGCAAACTTACTTGATATCTTCAACCCTCACGGAACCATTCTATCTCTTGAGGTTTGCCGGAATGCTGAAACTGGTGAAAGTATGGGGTGTGGTTATGTCACAATGGGATCCATAAACTCAGCAAGAAATGCAATTGCTGCACTGGATGGATCAGATGTTGAGGGGCGCGAAATGCGGGTTAGATTTTCATCTGAGATGAATCTTGGAAGAAGGAATAATGAGAACATGAACTCCTCCCCCAAGAGAGCGTTGTACTATGAAGCTCCCCATAAGTTGTATGTGGGCAATCTTGTTAGGGCTGTTAAACCTGAACAGTTGAGAAATCATTTTAGCAGATTTGGGAATGTGCTTAGTGTAAGAGTGTTGCATGATCATAATCAAGGGAAAAGAAGAGTCTATGCGTTTCTCTCTTTTCAATCAGAGGCAGAACGTGATGCAGCAATGTCTCTTAATGGAACAGAGTTTTATGGTCGTACCCTAGTAGTTAGAGAGGGTGTAGATAAGACTGAGGCTTAA 867 0.4475 MALALLPSSSSSSSSSVLSLKHKPRFLASAKRFVSHFWHPRYPCLVLLPTTLEPSSSLRKARLCVAAVVSEGINGEESLDTENDDVFQEEKEERRSKVPAPRPCELYVCNLPRSYDAANLLDIFNPHGTILSLEVCRNAETGESMGCGYVTMGSINSARNAIAALDGSDVEGREMRVRFSSEMNLGRRNNENMNSSPKRALYYEAPHKLYVGNLVRAVKPEQLRNHFSRFGNVLSVRVLHDHNQGKRRVYAFLSFQSEAERDAAMSLNGTEFYGRTLVVREGVDKTEA. 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11319 288 PANTHER OS02G0815200 PROTEIN 10 280 - -
Seca3g11319 288 SUPERFAMILY RNA-binding domain, RBD 204 285 IPR035979 GO:0003676
Seca3g11319 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 277 IPR000504 GO:0003723
Seca3g11319 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 176 IPR000504 GO:0003723
Seca3g11319 288 SUPERFAMILY RNA-binding domain, RBD 97 190 IPR035979 GO:0003676
Seca3g11319 288 Gene3D - 69 185 IPR012677 -
Seca3g11319 288 Gene3D - 186 288 IPR012677 -
Seca3g11319 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 182 IPR000504 GO:0003723
Seca3g11319 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 284 IPR000504 GO:0003723
Seca3g11319 288 FunFam 30S ribosomal protein 2, chloroplastic 194 282 - -
Seca3g11319 288 SMART rrm1_1 105 178 IPR000504 GO:0003723
Seca3g11319 288 SMART rrm1_1 208 280 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11319 Seca-Chr3 261166162 261170112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11319 106 287 Eukaryotic Initiation Factors Gene Family AT3G16380 30.978 9.86e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11319 - - gmx:100792560 308.145