Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11315 GTTTTATTGTGCATAAACCCTGAAACCCTAGAAATCGTATTGCATATTGGCATTTTGCAACAGAGCAGGGAAACCCTTCCTCGTCTGCGAGACTGTGATCTGTTTTTTTCAAGTGTGAAAATGTCGCTCGGAGAGGTTGCTTGCAGCTACTCACTCATGATCCTTCACGATGATAACATTGCTGTCACTGATGAGAAGATCTCAACTTTGTTGAAAGCTGCAAATGTTAAGGTTGAAGCTTTTTGGCCAAGCTTATTTGCTAAGCTTGCTGAGAAGAGAAGCATTGGGGATTTGATGTCCAGTGCCGTAGGAGGTGGGGCTCCTGTTGCTGTTTCAGCTCCAGCTGCTTCTGCCAGTGCTGCCTCTGCGGTTGCTCCTCCTACCGAAGAGAAGAAGAAGGAAGAACCCCAGGAAGAGAGTGACGATGATATGGGATTCAGCTTGTTTGATTAG 453 0.4614 VLLCINPETLEIVLHIGILQQSRETLPRLRDCDLFFSSVKMSLGEVACSYSLMILHDDNIAVTDEKISTLLKAANVKVEAFWPSLFAKLAEKRSIGDLMSSAVGGGAPVAVSAPAASASAASAVAPPTEEKKKEEPQEESDDDMGFSLFD. 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11315 150 FunFam 60S acidic ribosomal protein P1 41 104 - -
Seca3g11315 150 Pfam 60s Acidic ribosomal protein 62 149 - -
Seca3g11315 150 Hamap 50S ribosomal protein L12 [rpl12]. 46 150 IPR027534 GO:0003735|GO:0005840|GO:0006414
Seca3g11315 150 Gene3D - 41 104 IPR038716 -
Seca3g11315 150 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 41 150 - -
Seca3g11315 150 MobiDBLite consensus disorder prediction 119 150 - -
Seca3g11315 150 CDD Ribosomal_P1 45 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11315 Seca-Chr3 261134613 261135954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11315 41 150 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 50.450 1.49e-32 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11315 K02942 - egr:104424551 127.102