Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11314 ATGTATGACATTGCACAGAGAAAAGGTTGTCATAGTAAAATAAAGCAATTTCAGATGGTGGGTGGTAACAACAATTCGAGGCAATACAATGATGCAACTTGTACCAAAATATTTGTTGGAGGGTTAGCGTGGGAGACTCAAAGGGACACAATGAGGAGGTATTTTGAGCAGTTTGGAGAGATCATAGAGGCTGTTGTTATCACAGACAAGAACACAGGGAGATCTAAGGGTTATGGTTTTGTCACATTCAAGGATCCAGAGGCAGCAAAAAAAGCATGTCAGAATCCCTCTCCAATAATTGATGGGAGAAGAGCAAACTGTAATATTGCAGCTATTGGTGCAAACAAGAATCGTCCACAGACTCCTCAATCTGGTCTCAATCCACGGTTTAGAGCAGCACCTGGTATGTTGGCTTCACCTCCTTATCATGGACCTTCCTCTACATTTGTACATCAAACCACTGAGCAATACACATTTCCTTATTCAACTTATGGGTACACTGGATATCCACAAGCACAAGACACAATGTACCCTATGAACTGTTATGGTGTCTATGGAGGTCAACAATTTTCAACTTACTACCCCACCAATGGGGCATCTGGGCTAATGGGATTGATCCCTAATATGTACCCTTTGTGTACCCAATATGCATACAATGGCCAGCCCCATGGTTTTGGAGTTCAATATCCCCAAACGATGCAGTTTCCTAATTTCCTCCCTCGACACTTTGGCTCACATGCAGGGATCCTAACATTTCCTTCTTCAATGGCAATGCCAACTATTCCTGCAGTTACAACAACAGCAACTACAACTACAACAGAGGCTATAACAACAGGTGCAGCTGCTTCACAAGCCACAGAAACAACTTGTGAGCAAAATTGA 882 0.4263 MYDIAQRKGCHSKIKQFQMVGGNNNSRQYNDATCTKIFVGGLAWETQRDTMRRYFEQFGEIIEAVVITDKNTGRSKGYGFVTFKDPEAAKKACQNPSPIIDGRRANCNIAAIGANKNRPQTPQSGLNPRFRAAPGMLASPPYHGPSSTFVHQTTEQYTFPYSTYGYTGYPQAQDTMYPMNCYGVYGGQQFSTYYPTNGASGLMGLIPNMYPLCTQYAYNGQPHGFGVQYPQTMQFPNFLPRHFGSHAGILTFPSSMAMPTIPAVTTTATTTTTEAITTGAAASQATETTCEQN. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11314 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 112 IPR000504 GO:0003723
Seca3g11314 293 SMART rrm1_1 36 108 IPR000504 GO:0003723
Seca3g11314 293 Gene3D - 5 125 IPR012677 -
Seca3g11314 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 95 IPR000504 GO:0003723
Seca3g11314 293 CDD RRM_RBM24_RBM38_like 35 110 - -
Seca3g11314 293 PANTHER BOULE-RELATED 25 272 - -
Seca3g11314 293 SUPERFAMILY RNA-binding domain, RBD 24 122 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11314 Seca-Chr3 261130099 261132419 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11314 37 111 C2H2 Transcription Factor Family AT2G19380 44.000 1.21e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11314 - - gmx:100782484 386.341