Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11310 ATGTCTCAACAAAGGCAACCTCAGATGGTGGGTGGTGACAATTTGGCCCAATATAATGACACAACATTTACCAAAATCTTTGTTGGAGGGTTAGCTTGGGAGACTCAGAGGGACACAATGAGGAGGTATTTTGAGCAATTTGGAGAGATCTTAGAGGCTGTTGTTATCACAGATAAGAACACGGGGAGATCCAAAGGTTATGGCTTTGTCACATTTAAGGATCCAGAGGCAGCCATGAGAGCATGTCACAACCCATCTCCAGTTATTGATGGGAGGAGGGCAAACTGCAATCTTGCTTCTCTTGGTGCAAACAAGAATAGACAACTACCTCTTCAGCATGGTCGTGCAGGAAGGTTCAGGCCTCCACCTGGACTGGTGGCATCACCTCCTTATCATGGTTCTTCATCTTCATTTTTCCATCAACCCACTAGGCAATACACATTTCCTTATTCAGCTTACGGATATTCTGGATATTCACAAGACACATTGTATCCTACGAACTATTATAATGTCTATGGAGTTCAACAATTTTCACCTTACTACCCATCCACGGGAGCTTCTGGGGCAGTGGGGTTGATCCCTAATATCTACCCTTTCTATGGTCAATATGCACAGAACATCCAGACTCATGGTTTTGGAGTTCAGTACCCCCAAGTGGCACAGTTTCCATTTTTGCCTCAGCAATATGGCTCCACAGGGATATTGTCATTTCCTTCTTCAGTGGCAGTGCCAACTACAAGTGCAGCAACAGCAGCAACTGCAACCACAGCTACAATATCAGCAAGTGTGGCAGTAACAAGTGTTGGTAGCTCACAAGCCTCTGAACAAAATTCTACATCTTGA 843 0.446 MSQQRQPQMVGGDNLAQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACHNPSPVIDGRRANCNLASLGANKNRQLPLQHGRAGRFRPPPGLVASPPYHGSSSSFFHQPTRQYTFPYSAYGYSGYSQDTLYPTNYYNVYGVQQFSPYYPSTGASGAVGLIPNIYPFYGQYAQNIQTHGFGVQYPQVAQFPFLPQQYGSTGILSFPSSVAVPTTSAATAATATTATISASVAVTSVGSSQASEQNSTS. 281
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11310 280 SMART rrm1_1 25 97 IPR000504 GO:0003723
Seca3g11310 280 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 18 105 - -
Seca3g11310 280 Gene3D - 1 116 IPR012677 -
Seca3g11310 280 PANTHER BOULE-RELATED 12 256 - -
Seca3g11310 280 SUPERFAMILY RNA-binding domain, RBD 10 123 IPR035979 GO:0003676
Seca3g11310 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 116 IPR000504 GO:0003723
Seca3g11310 280 CDD RRM_RBM24_RBM38_like 24 99 - -
Seca3g11310 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 81 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca3g11310 Seca-Chr3 261008057 261011316 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11310 20 100 C2H2 Transcription Factor Family AT2G19380 44.444 6.87e-16 75.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11310 - - pvu:PHAVU_010G118600g 447.588