Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca3g11310 | ATGTCTCAACAAAGGCAACCTCAGATGGTGGGTGGTGACAATTTGGCCCAATATAATGACACAACATTTACCAAAATCTTTGTTGGAGGGTTAGCTTGGGAGACTCAGAGGGACACAATGAGGAGGTATTTTGAGCAATTTGGAGAGATCTTAGAGGCTGTTGTTATCACAGATAAGAACACGGGGAGATCCAAAGGTTATGGCTTTGTCACATTTAAGGATCCAGAGGCAGCCATGAGAGCATGTCACAACCCATCTCCAGTTATTGATGGGAGGAGGGCAAACTGCAATCTTGCTTCTCTTGGTGCAAACAAGAATAGACAACTACCTCTTCAGCATGGTCGTGCAGGAAGGTTCAGGCCTCCACCTGGACTGGTGGCATCACCTCCTTATCATGGTTCTTCATCTTCATTTTTCCATCAACCCACTAGGCAATACACATTTCCTTATTCAGCTTACGGATATTCTGGATATTCACAAGACACATTGTATCCTACGAACTATTATAATGTCTATGGAGTTCAACAATTTTCACCTTACTACCCATCCACGGGAGCTTCTGGGGCAGTGGGGTTGATCCCTAATATCTACCCTTTCTATGGTCAATATGCACAGAACATCCAGACTCATGGTTTTGGAGTTCAGTACCCCCAAGTGGCACAGTTTCCATTTTTGCCTCAGCAATATGGCTCCACAGGGATATTGTCATTTCCTTCTTCAGTGGCAGTGCCAACTACAAGTGCAGCAACAGCAGCAACTGCAACCACAGCTACAATATCAGCAAGTGTGGCAGTAACAAGTGTTGGTAGCTCACAAGCCTCTGAACAAAATTCTACATCTTGA | 843 | 0.446 | MSQQRQPQMVGGDNLAQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACHNPSPVIDGRRANCNLASLGANKNRQLPLQHGRAGRFRPPPGLVASPPYHGSSSSFFHQPTRQYTFPYSAYGYSGYSQDTLYPTNYYNVYGVQQFSPYYPSTGASGAVGLIPNIYPFYGQYAQNIQTHGFGVQYPQVAQFPFLPQQYGSTGILSFPSSVAVPTTSAATAATATTATISASVAVTSVGSSQASEQNSTS. | 281 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca3g11310 | 280 | SMART | rrm1_1 | 25 | 97 | IPR000504 | GO:0003723 | |
Seca3g11310 | 280 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 18 | 105 | - | - | |
Seca3g11310 | 280 | Gene3D | - | 1 | 116 | IPR012677 | - | |
Seca3g11310 | 280 | PANTHER | BOULE-RELATED | 12 | 256 | - | - | |
Seca3g11310 | 280 | SUPERFAMILY | RNA-binding domain, RBD | 10 | 123 | IPR035979 | GO:0003676 | |
Seca3g11310 | 280 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 24 | 116 | IPR000504 | GO:0003723 | |
Seca3g11310 | 280 | CDD | RRM_RBM24_RBM38_like | 24 | 99 | - | - | |
Seca3g11310 | 280 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 26 | 81 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca3g11310 | Seca-Chr3 | 261008057 | 261011316 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca3g11310 | 20 | 100 | C2H2 Transcription Factor Family | AT2G19380 | 44.444 | 6.87e-16 | 75.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca3g11310 | - | - | pvu:PHAVU_010G118600g | 447.588 |