Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11309 ATGGGGAAGAAAGGAAGTAGCTCATGGTTAACTGCTGTCAAAAGGGCATTCAGATCTCCCACCAAAGACACTGACAAAAGGAGTGGTAGAAGAAGAGAGGACTATGATCAAGAAGAAGATGAAGAGAAGAAGAGAGAAAAACGAAGGTGGATTTTCAGGAAAGCTGTGAATCATGAAACGGTGAACACTCAACAAACTCCAACAAAGTTGAAGCATGATGTGGCTTCAAGGAAAGACCAAGATCAAAAGCATGCTCTTGCTGTGGCAGTGGCCACCGCAGAGGCAGCCATGGCCACCGCTCAAGCTGCTGTGGAGGTGGCAAGGTTGACCAAGCCTTCTTCTTCTAATCATGTTTCTGCAAAGGAGCATTATGCTGCTGTTGTGATTCAAACTGCTTTCAGAGGATATCTGGCAAGAAGAGCACTTCGTGCGCTAAAGGGGCTGGTGAAGTTGCAAGCTTTAGTGAGGGGTCACAATGTTAGGAAGCAAGCAAAGATGACCCTTCGGTGCATGCAAGCTCTGGTTAGAGTACAAGCAAGGGTCCTTGACCAGCGCATAAGGTCTTCCCTTGATGGAAGTAGAAAATCCACCTTCAGTGACACTGCCAGCGTTTGGGAATCACGGTATCTTCAGGACATTTCAGATAGAAAATCAATATCAAGAGAAGGAAGCAGCATTGCAGATGACTGGGATGAACGTCCACACACAGTTGAAGAAGTGAAGGCCATGTTGCAACAGAGGAAGGAAGCAGCTATGAAGAGGGACAAGTCCTTATCCCAAGCTTTTTCACAACAGGTTTCAGTTTCTTTCACCCTCTTGATTGCTGAAATTGAATTTGATAGCCTAATTGGTTTGGTTGTGACTTTGACAATGTCATGCATAGATTTGGAGGAATGGTAG 900 0.4544 MGKKGSSSWLTAVKRAFRSPTKDTDKRSGRRREDYDQEEDEEKKREKRRWIFRKAVNHETVNTQQTPTKLKHDVASRKDQDQKHALAVAVATAEAAMATAQAAVEVARLTKPSSSNHVSAKEHYAAVVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSSLDGSRKSTFSDTASVWESRYLQDISDRKSISREGSSIADDWDERPHTVEEVKAMLQQRKEAAMKRDKSLSQAFSQQVSVSFTLLIAEIEFDSLIGLVVTLTMSCIDLEEW. 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11309 299 MobiDBLite consensus disorder prediction 18 46 - -
Seca3g11309 299 FunFam IQ-domain 11 121 172 - -
Seca3g11309 299 ProSiteProfiles IQ motif profile. 146 173 IPR000048 GO:0005515
Seca3g11309 299 Gene3D - 119 176 - -
Seca3g11309 299 ProSiteProfiles IQ motif profile. 122 150 IPR000048 GO:0005515
Seca3g11309 299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 167 IPR027417 -
Seca3g11309 299 PANTHER IQ-DOMAIN 5-RELATED 1 266 - -
Seca3g11309 299 MobiDBLite consensus disorder prediction 1 46 - -
Seca3g11309 299 MobiDBLite consensus disorder prediction 58 77 - -
Seca3g11309 299 SMART iq_5 144 165 IPR000048 GO:0005515
Seca3g11309 299 SMART iq_5 121 143 IPR000048 GO:0005515
Seca3g11309 299 Pfam IQ calmodulin-binding motif 149 165 IPR000048 GO:0005515
Seca3g11309 299 Pfam IQ calmodulin-binding motif 125 143 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11309 Seca-Chr3 260989442 260993668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11309 9 266 IQD Protein Family AT4G00820 60.000 2.49e-92 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11309 - - lja:Lj3g3v2484090.1 380.178