Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11305 ATGAGCACGATGGCGGCGAAACCTCGTACACGGGTAGGGAAGTACGAGCTGGGAAAAACCATTGGTGAGGGAAGCTTTGCGAAGGTAAAGTTCGCTAAGGACGTAGAGACTGGGAACCATGTGGCCATCAAAATCCTTGACCGCAACCACGTCCTTCGCCATAAGATGATGGAACAGCTGAAGAAAGAGATTTCGGCGATGAAGCTGATCAATCATCCAAACGTTGTCAAAATATTTGAGGTAATGGCAAGCAAAACAAAGATTTACATTGTTTTGGAGTTGGTTAATGGAGGAGAATTGTTTGACAAAATAGCTACAAATGGGAGACTTAAAGAGGATGAGGCAAGAAGTTATTTCCAACAACTGATCAATGCAGTTGATTACTGCCATAGTAGAGGCGTTTATCACCGAGATTTGAAGCCTGAGAATCTTCTTCTGGACTCAAATGGTGTTCTTAAAGTCTCAGATTTTGGATTGAGCACGTACGCACAGCAGGAGGGTGAACTACTCCGCACTGCTTGTGGAACTCCAAATTATGTGGCTCCTGAGGTGCTTAATGATAGAGGTTATGTTGGTTCTGCATCTGATATCTGGTCCTGTGGAGTTATTCTCTTTGTACTCATGGCTGGGTTCTTGCCTTTTGATGAACCAAATCAGTTGGCACTGTACAGGAAAATTGGCAGGGCTGACTTCATATGTCCATCTTGGTTTTCGCCTGAGGCAAAGAAACTCCTGAAGTCTATTCTTGATCCAAACCCTCTAACAGTGAGTTCTGAACTGAAAGCTTTCTTACCTTTACATGTATCTTGTATGTGGTTAAAATACTATTCTCTTTTAAAACTGGGTTTCATTTTACAGAGGATAAAAATTCCTGAGCTCTTACAAAATGAATGGTTCAAAAAAGGATACAAGCCACCATGTTTTACTGAGGATGAGGATGTCAATGTAGATGATGTAGCTGCTGCTTTCGATGATTCTAAGGAAAATCTCGTGACAGAGAGAAAAGAGAAACCCGTGTCAATGAATGCTTTTGAGCTCATTTCTAGGTCCCAAAGCTTCAATCTTGACAGTTTGTTTGAGAAGCAGACAGTACGTAAACTTTACTTTGTGCTCTCTTCATTTTAA 1125 0.4151 MSTMAAKPRTRVGKYELGKTIGEGSFAKVKFAKDVETGNHVAIKILDRNHVLRHKMMEQLKKEISAMKLINHPNVVKIFEVMASKTKIYIVLELVNGGELFDKIATNGRLKEDEARSYFQQLINAVDYCHSRGVYHRDLKPENLLLDSNGVLKVSDFGLSTYAQQEGELLRTACGTPNYVAPEVLNDRGYVGSASDIWSCGVILFVLMAGFLPFDEPNQLALYRKIGRADFICPSWFSPEAKKLLKSILDPNPLTVSSELKAFLPLHVSCMWLKYYSLLKLGFILQRIKIPELLQNEWFKKGYKPPCFTEDEDVNVDDVAAAFDDSKENLVTERKEKPVSMNAFELISRSQSFNLDSLFEKQTVRKLYFVLSSF. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11305 374 Pfam NAF domain 338 362 IPR004041 GO:0007165
Seca3g11305 374 ProSiteProfiles NAF domain profile. 336 360 IPR018451 GO:0007165
Seca3g11305 374 SUPERFAMILY Protein kinase-like (PK-like) 12 255 IPR011009 -
Seca3g11305 374 ProSiteProfiles Protein kinase domain profile. 15 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11305 374 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 362 - -
Seca3g11305 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Seca3g11305 374 Gene3D Kinase associated domain 1, KA1 335 373 - -
Seca3g11305 374 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Seca3g11305 374 SMART serkin_6 15 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11305 374 Gene3D Transferase(Phosphotransferase) domain 1 7 259 - -
Seca3g11305 374 FunFam Non-specific serine/threonine protein kinase 6 94 - -
Seca3g11305 374 Pfam Protein kinase domain 15 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11305 374 FunFam Non-specific serine/threonine protein kinase 8 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11305 Seca-Chr3 260936499 260941332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11305 9 363 CBL-interacting serine-threonine protein kinases AT1G01140 68.436 1.01e-179 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca3g11305 Pkinase 2.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11305 - - gmx:100794136 572.007