Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11300 ATGGAAAATTTGATCATCTCTCCTTCTCCTTCCTCCTCTCTGCCTCAGAAAATTACACCAACACCAACCCTTCAGCAAAAGCTTCAATTTTTACTCCAAAACCAACCCGATTGGTGGGTGTATGCCATTTTCTGGCAGACCTACAACGATGAAAAAGGTAACCTGTTCTTATCCTGGGGAGAAGGCTATTTCCAAGGCACAAACGAGACTTCCCCAAAACCACAACCACAACAGCAAAGGAAGTTCATGATCAACGACACGAGCACAAACGGCGAGGCAGAGTGGTTCTACGTCATGTCGTTGACTCGCACCTTCTCCGTCGGCAATGCTTCTTCCTCATCCCTCCCTGGCAAGGCCTACGCTTTAGGCTCAGTGCTGTGGCTAAACAGCAAGGACGAGCTTCAATTCTACAACTGTGAGAGGTCCAATGAGGCACACTTACACGGGATTCAAACCTTGATCTGTATCCCAATCCCAAACGGCGTCGTTGAAATGGGTTCCTACTACAACATCCAAGAAAACTGGTCTCTCGTTCACCAAGTCAAATCCATCTTCGAACCATCATCAGATCTCAATCTCATGACCACACCAGTACAGGACGACGACGACGACAACAACAACACAATCGAAATGTTCGACAGCCACAACATCTCCTTCGCCGACATCGGCATCATCACCGGCGTTCAAGAACCACAGGACAATAACAGAAAAAAAAGGACATTGGAATTGGAACCAAAGATTGGCTCCTCATCACTACTTTATATGGATTCAGAGCACTCTGATTCAGATTGTCCACCATCCATCGTACCAGAAAAGAAGGAACGGAAGAAGAGAGGGAGGAAACCGCTTATAGGACGCGAGACTCCAATAAACCATGTGGAAGCTGAGAGGCAGAGGAGGGAGAAGCTCAACCATCGTTTCTATGCTTTAAGAGCTGTTGTACCGAACGTTTCGAGGATGGATAAGGCTTCTTTGTTGTCTGATGCGGTGGCTTACATCAACGAGCTGAAGGGAAAGATTGAAGATTTGGAGTCTCAGCAGGTTAATAATAAGGAGTGTAGCAAGAAGGTGAAGTCGGAAATGGGAGATACGATGGACAACCAGAGCACAACCACAACTTCGACTGTGGTGGATCAAACAGGGCCTAATGGGTCTGGGATTGAGATTGATGTGAAGATAATAGGGCCTGATGCGATGGTGAGGGTTCAATCGGAGAGTGTGAATCACCCTGGAGCAAGGCTAATGGGTGCATTGAGGGACTTGGAGTTTCAGGTACACCATGCTAGCATTTCATGTGTTAATGACCTTATGGTTCAAGATGTTATTGTTAAGATTCCTAATGGGATGAGAAGCGAGGAGGCTCTTAAATCTGCAATTCTCATGAGATGGGATCAATAG 1398 0.4649 MENLIISPSPSSSLPQKITPTPTLQQKLQFLLQNQPDWWVYAIFWQTYNDEKGNLFLSWGEGYFQGTNETSPKPQPQQQRKFMINDTSTNGEAEWFYVMSLTRTFSVGNASSSSLPGKAYALGSVLWLNSKDELQFYNCERSNEAHLHGIQTLICIPIPNGVVEMGSYYNIQENWSLVHQVKSIFEPSSDLNLMTTPVQDDDDDNNNTIEMFDSHNISFADIGIITGVQEPQDNNRKKRTLELEPKIGSSSLLYMDSEHSDSDCPPSIVPEKKERKKRGRKPLIGRETPINHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVAYINELKGKIEDLESQQVNNKECSKKVKSEMGDTMDNQSTTTTSTVVDQTGPNGSGIEIDVKIIGPDAMVRVQSESVNHPGARLMGALRDLEFQVHHASISCVNDLMVQDVIVKIPNGMRSEEALKSAILMRWDQ. 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11300 465 MobiDBLite consensus disorder prediction 363 382 - -
Seca3g11300 465 Coils Coil 326 346 - -
Seca3g11300 465 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 287 336 IPR011598 GO:0046983
Seca3g11300 465 Pfam Helix-loop-helix DNA-binding domain 291 336 IPR011598 GO:0046983
Seca3g11300 465 SMART finulus 293 342 IPR011598 GO:0046983
Seca3g11300 465 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 24 185 IPR025610 -
Seca3g11300 465 CDD bHLH_AtAIB_like 285 361 - -
Seca3g11300 465 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 287 347 IPR036638 GO:0046983
Seca3g11300 465 MobiDBLite consensus disorder prediction 256 289 - -
Seca3g11300 465 PANTHER MYC 21 462 IPR045084 GO:0003700|GO:0006355
Seca3g11300 465 MobiDBLite consensus disorder prediction 359 382 - -
Seca3g11300 465 Gene3D - 286 364 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11300 Seca-Chr3 260863866 260865308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11300 24 459 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 35.393 9.79e-94 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g11300 bHLH-MYC_N 1.9e-47 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11300 - K13422 gmx:100795733 582.408