LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g11298	ATGGGCCAGTGCTACGGCAAAACCAATCCCACACCGGAAAATGACAACACCACCGCCACAGTTGCCGGACCCGGCGACCTCCCGCTCTCTCCGGCGCCGTCCTCCACCGCCGGAACCGGGAACGGATTTCCGTCGGTGAAGGGCACGCCAGCTCGGTCCTCCTCCGCCGCGAGCCCCTGGCCCAGCCCGTACCCTCAGGGAGGCGGAGTGACGCCGTCTCCGGCGAGGGGTACGCCAAGGAGGTTTTTCCGGCGGCCGTTTCCGCCGCCCTCGCCTGCGAAGCATATAAGGGCGTCGCTGGCGAAGCGTCTGGGTCACGCGAAGACGCCGAAGGAAGGGCCGATACCGGAGGAGGAGCGGGTGGCGGAGGAGACGCTAGATAAGAGCTTTGGGTATAGCAAAAATTTTGGGGCAAGGTTTGAGCTTAGGAAGGAAGTGGGGAGAGGGCATTTTGGTCATACTTGCTATGCCAGGGGCAAGAAGGGTGACCTCAAAGACCAACATGTAGCTGTTAAGATTATTTCCAAGGCCAAGATGACCACAGCAATAGCAATTGAAGATGTTCGGAGAGAGGTGAAGATATTAAAAGCACTATCTGGCCATAAGCATCTTGTCAAATTTCATGATGCCTTTGAGGATGCCAACAATGTGTACATAGTTATGGAATTGTGTGAAGGTGGGGAGCTTCTTGACAGAATTTTGTCAAGGGGAGGAAAGTATACAGAGGAGGATGCCAAGGTTATAATTTTGCAGATCCTTAGCGTAGTTGCTTTTTGTCATCTTCAAGGCGTTGTGCACCGTGACCTGAAACCCGAGAATTTCCTTTTCACTTCAAGAAGTGAAAATGCTGATATGAGGCTTATTGATTTTGGTCTGTCTGACTTCATCAGGCCAGATGAACGGCTGAATGACATTGTTGGGAGTGCATATTATGTTGCACCTGAGGTCCTTCACAGGTCATATAGTCTGGAGGCAGATATATGGAGTATTGGTGTTATTACCTATATCTTGTTATGTGGAAGTCGACCTTTCTGGGCACGAACAGAATCTGGAATTTTTCGTGCAGTTCTTCGAGCTGAACCTAACTTTGATGATTTACCTTGGCCATCTGCCTCTGCAGAGGCTAAGGACTTTGTAAAAAGGCTCCTAAACAAGGACTACAGGAAAAGAATGACTGCTGTCCAAGCTCTAACTCATCCTTGGTTGAGGGATGACAGCCGTCCCATCCCTTTGGATATATTAGTCTATAAACTAGTGAAGGCTTATCTTCATGCGACACCGTTCAAACGTGCAGCATTGAAGGCCCTTTCAAAAGCCCTGACAGAGGATGAGTTGCCCTATCTTAGGGCACAATTCAGATTATTGGAACCAAATAGAGACGGACACATTTCCCTTGAGAATTTCAAAATGGTTATATACTGCTTCACTAATAAATCTTCTAGTCTTGATATGATTGATAAAGCTCTTGTGCGCCATGCAACTGATGCTATGAGTGAGTCCAGGGTTCTTGATATCATACATGCGATGGAACCACTTGCCTATAGGAAGATGGACTTTGAAGAATTTTGTGCAGCTGCAATTAGCATATATCAATTAGAGGCACTTGATAGGTGGGAAGATATTGCTTCCACTGCTTTTGAACATTTTGAGAGAGAGGGCAACCGTCTGATATCAGTTGAAGAATTAGCAAGAGAGTTGAATCTTGGTCCTACAGCTTACTCAATTATCAAAGATTGGATACGAAATACTGATGGAAAGCTTAATTTACTTGGATATACAAAATTTTTGCATGGTGTGACTCACCGTAGCTCAAACACTAGACACCGTTGGTCTTGA	1836	0.4728	MGQCYGKTNPTPENDNTTATVAGPGDLPLSPAPSSTAGTGNGFPSVKGTPARSSSAASPWPSPYPQGGGVTPSPARGTPRRFFRRPFPPPSPAKHIRASLAKRLGHAKTPKEGPIPEEERVAEETLDKSFGYSKNFGARFELRKEVGRGHFGHTCYARGKKGDLKDQHVAVKIISKAKMTTAIAIEDVRREVKILKALSGHKHLVKFHDAFEDANNVYIVMELCEGGELLDRILSRGGKYTEEDAKVIILQILSVVAFCHLQGVVHRDLKPENFLFTSRSENADMRLIDFGLSDFIRPDERLNDIVGSAYYVAPEVLHRSYSLEADIWSIGVITYILLCGSRPFWARTESGIFRAVLRAEPNFDDLPWPSASAEAKDFVKRLLNKDYRKRMTAVQALTHPWLRDDSRPIPLDILVYKLVKAYLHATPFKRAALKALSKALTEDELPYLRAQFRLLEPNRDGHISLENFKMVIYCFTNKSSSLDMIDKALVRHATDAMSESRVLDIIHAMEPLAYRKMDFEEFCAAAISIYQLEALDRWEDIASTAFEHFEREGNRLISVEELARELNLGPTAYSIIKDWIRNTDGKLNLLGYTKFLHGVTHRSSNTRHRWS.	612

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g11298	611	ProSiteProfiles	EF-hand calcium-binding domain profile.	443	478	IPR002048	GO:0005509
	Seca3g11298	611	MobiDBLite	consensus disorder prediction	1	23	-	-
	Seca3g11298	611	Gene3D	Phosphorylase Kinase; domain 1	133	228	-	-
	Seca3g11298	611	PANTHER	SERINE/THREONINE-PROTEIN KINASE	124	584	-	-
	Seca3g11298	611	Pfam	Protein kinase domain	141	402	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca3g11298	611	FunFam	Calcium-dependent protein kinase SK5	312	411	-	-
	Seca3g11298	611	SUPERFAMILY	Protein kinase-like (PK-like)	139	424	IPR011009	-
	Seca3g11298	611	SMART	serkin_6	140	402	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca3g11298	611	FunFam	CDPK-related kinase 1	133	228	-	-
	Seca3g11298	611	MobiDBLite	consensus disorder prediction	1	94	-	-
	Seca3g11298	611	FunFam	CDPK-related kinase 3	132	304	-	-
	Seca3g11298	611	ProSiteProfiles	Protein kinase domain profile.	140	402	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca3g11298	611	SUPERFAMILY	EF-hand	428	598	IPR011992	-
	Seca3g11298	611	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	264	276	IPR008271	GO:0004672\|GO:0006468
	Seca3g11298	611	ProSitePatterns	Protein kinases ATP-binding region signature.	146	172	IPR017441	GO:0005524
	Seca3g11298	611	MobiDBLite	consensus disorder prediction	32	61	-	-
	Seca3g11298	611	Gene3D	-	410	602	-	-
	Seca3g11298	611	CDD	STKc_CAMK	139	401	-	-
	Seca3g11298	611	Gene3D	Transferase(Phosphotransferase) domain 1	229	409	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g11298	Seca-Chr3	260769052	260778480	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g11298	1	603	EF-hand Containing Proteins	AT3G50530	57.538	0.0	713

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Seca3g11298		Pkinase	3.8e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g11298	-		-	gmx:100796256	998.423