Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11293 ATGTTAGACTCTAGTATGGAATATACATATTCAGCAGAAGAAGCTGCAGAGGCAGAAACTTACACTACCACCAGCAGCAACACTCCACCATCAGCTTCCATGAGAAAGAAGAAAATCAAGAACACAAGAAGGTTCAGTGATGACCAAATCAAATCATTGGAGTCTATGTTTGAGACTGAGACAAGGCTTGAACCAAGAAAGAAGTTGCAGTTGGCAAGAGAGCTTGGATTGCAGCCAAGACAGGTTGCTATTTGGTTTCAGAACAAGAGAGCTAGATGGAAGTCTAAGCAACTTGAGAGAGACTACAGCATGCTTCTATCCAATTACAACAATTTGGCTTCACGGTTTGAAACTCTTAAGAAGGAAAAGCAAACATTACTAATACAGGTATTGCAAAAGCTGAATGGTCTAATACAGAAGCCATTAGAGGAGCAAAGTCAGAGTTCTACACAAGTTAAAGCAGCAAACAGCATGGACAGTGAATCAGAAAATGGAGCCACCATCAAATGTGAAGCTGAGGTAAAGCCAAGCCCATCCATGGAAAGATCAGAACATGTACTTAGTGTTCTTTCTGATGATGACACCAGTATAAAGGTAGAATATTTTGGCTTGGAAGATGAGCCTGGCCTTCTGAATTTTGGTGAGCATGCTGATGGTTCCTTGACATCACCAGAGGAATGGGGTGCTTTTGACTCCAATGATCTGTTAGGCCATTCAACAGGAGATTATCAATGGTGGGACTTTTGGTCCTGA 753 0.417 MLDSSMEYTYSAEEAAEAETYTTTSSNTPPSASMRKKKIKNTRRFSDDQIKSLESMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYSMLLSNYNNLASRFETLKKEKQTLLIQVLQKLNGLIQKPLEEQSQSSTQVKAANSMDSESENGATIKCEAEVKPSPSMERSEHVLSVLSDDDTSIKVEYFGLEDEPGLLNFGEHADGSLTSPEEWGAFDSNDLLGHSTGDYQWWDFWS. 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11293 250 SMART HOX_1 39 100 IPR001356 GO:0003677
Seca3g11293 250 Coils Coil 109 129 - -
Seca3g11293 250 Gene3D - 23 106 - -
Seca3g11293 250 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 30 177 IPR045224 GO:0003700
Seca3g11293 250 ProSitePatterns 'Homeobox' domain signature. 71 94 IPR017970 GO:0000981|GO:0006355
Seca3g11293 250 PRINTS Lambda-repressor HTH signature 76 92 IPR000047 GO:0003677
Seca3g11293 250 PRINTS Lambda-repressor HTH signature 67 76 IPR000047 GO:0003677
Seca3g11293 250 ProSiteProfiles 'Homeobox' domain profile. 36 96 IPR001356 GO:0003677
Seca3g11293 250 Pfam Homeobox associated leucine zipper 96 136 IPR003106 GO:0006355|GO:0043565
Seca3g11293 250 Pfam Homeodomain 43 94 IPR001356 GO:0003677
Seca3g11293 250 FunFam Homeobox-leucine zipper protein ATHB-7 22 96 - -
Seca3g11293 250 CDD homeodomain 40 97 IPR001356 GO:0003677
Seca3g11293 250 MobiDBLite consensus disorder prediction 16 40 - -
Seca3g11293 250 SUPERFAMILY Homeodomain-like 23 98 IPR009057 -
Seca3g11293 250 MobiDBLite consensus disorder prediction 16 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11293 Seca-Chr3 260683223 260685277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11293 17 250 Homeobox Transcription Factor Family AT2G46680 48.819 5.30e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca3g11293 Homeodomain 3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11293 K09338 - gmx:100797862 352.058