Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11285 ATGATTCCTTGCAACCCCATATTCCTTGTTATCTGCACGGCCCTCGTTTGTTTCATAATTCGATTGATGTTGTTCAAAACGGGGTTGATATACACCACCAAGAAACTCCATAGAAAGGTACAAGATTGGTTCCACGTGTACCAGTTCCTCAAAGTCCCCGAATTAAACGAAAGCATGCAACGGAATCAGCTCCACCGCAAGGTCTCCCTCTATTTGCATTCTCTTCCTTCCATTGAAGACTCTGACTTCACCAACCTCGTCACCGGGAACAACCAAAACGACATCGTTCTCACCCTCGACCCAAACCAAACCATCGAGGACCATTTTCTCGGGGCCACGCTCTTCTGGTTCAAACAAAAAACCGAACCGAACCGGACCAGCGCCTTCGTCCTGAAAATCAGAAAAACCGATAAACGCAGAATTCTCCGCCCTTATCTCCGCCACATCCACGCCGTTGCCGACGAGATAGAGAACCAAGGGAAGCGCTATTTGCGGCTGTTCATGAACGTCGCCAGCGGCAGTGGAACGCGGTGGAAATCCGTTCCGTTCAACCATCCGGCGACGTTCGAGACCATGGCGATGGAATTAGATCTCAAGAACAAGATAAAATCGGACCTCGAATTGTTCCTCAAGGCGAAGCAATACTACCGGCGGCTCGGCCGTGCGTGGAAACGGAGCTTCCTTTTGTACGGTCCCTCTGGCACTGGAAAATCGAGCTTTGTCGCCGCCATGGCTAATTTCCTCTGTTACGACGTGTACGACGTGGACCTCTCCAAGGTTCGCGGCGATTCAGATCTGAAGTTTCTCCTCCTCGAAACAACGGCGAAATCGATCATTGTCGTGGAGGATCTCGACCGGTTTCTGGCAGGGGAATCGCAATCGGCGTCGTTAACGGCATCGGGGGTCCAGAACTTCATGGACGGGATTCTGAGCTCTTGTTGCGGCGAAGAGAGGATCATGGTGTTCACGATGAACAGCAAGGAGTGTATTGACCCGAACCTGCTACGTCCGGGTCGGGTCGACGTGCACATCCATTTTCCGGTGTGCGATTTCTCGGCGTTCAAGACGCTGGCGAGTAGCTACCTTGGGGTGAAGGAGCACAAGCTGTTCCCGCAGGTGGAGGAGATTTTCCGGCAGGGCGCGAGTCTCAGCCCCGCGGAGATCAGCGAGTTGATGATCGCGAATCGGAACTCGCCGAGTCGGGCCATCAAATCGGTTATCGGGGCGCTCCAAACGGACGGTGATGGGAGGGGGTGCGGGGATGTGATCGGACGGCAGATGGGAGACGATGACGTGGATGAAGGGCCCGAAGGGGTGCTGTGTGGTGGTGAGGGTTTCACTACGGTTAAGGATTTACGGAAGTTGTACGGTTTCTTCAGATTGCGGAACGCCAAAAGATCTCGCTCGTCTAATTGCTTGGTCAATGAAAGATAA 1434 0.5314 MIPCNPIFLVICTALVCFIIRLMLFKTGLIYTTKKLHRKVQDWFHVYQFLKVPELNESMQRNQLHRKVSLYLHSLPSIEDSDFTNLVTGNNQNDIVLTLDPNQTIEDHFLGATLFWFKQKTEPNRTSAFVLKIRKTDKRRILRPYLRHIHAVADEIENQGKRYLRLFMNVASGSGTRWKSVPFNHPATFETMAMELDLKNKIKSDLELFLKAKQYYRRLGRAWKRSFLLYGPSGTGKSSFVAAMANFLCYDVYDVDLSKVRGDSDLKFLLLETTAKSIIVVEDLDRFLAGESQSASLTASGVQNFMDGILSSCCGEERIMVFTMNSKECIDPNLLRPGRVDVHIHFPVCDFSAFKTLASSYLGVKEHKLFPQVEEIFRQGASLSPAEISELMIANRNSPSRAIKSVIGALQTDGDGRGCGDVIGRQMGDDDVDEGPEGVLCGGEGFTTVKDLRKLYGFFRLRNAKRSRSSNCLVNER. 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11285 477 Gene3D - 178 348 IPR027417 -
Seca3g11285 477 PANTHER BCS1 AAA-TYPE ATPASE 43 411 - -
Seca3g11285 477 SMART AAA_5 223 350 IPR003593 GO:0016887
Seca3g11285 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 405 IPR027417 -
Seca3g11285 477 Pfam Domain associated at C-terminal with AAA 34 116 IPR025753 -
Seca3g11285 477 Pfam ATPase family associated with various cellular activities (AAA) 228 347 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11285 Seca-Chr3 260518693 260520126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11285 219 348 Calmodulin-binding Proteins AT3G56690 28.671 1.64e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11285 - K08900 gmx:100787809 726.857