Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11283 ATGATGGTTGTGGATGTGTTCACTTCTGGTCCTACCACAACTGTCATTTCTCAAATTATAGATACCATTGGTGAGTTCCTATATTATGCCAGTGATGTCCTTGTGAAGAAGGAGAGTTTTAAGGAACTTGCAGCTTACATGGAAAGAATTGTGCCCATCTTAAAAGAATTGAGGAAAGAAAAAGTCAGTGATTCTGAAACATTCAACCGTGCCGTTGAGGTTATGAATGGTGAAATTAAAAATGCAAAGCTACTGGCTCAAGAATGCAGCAAGAAGAGCAAGGTTTATCTCCTAATGAATTGCAGGTCCATTGTTAAGCGCTTAGAAGACCACACAAAGGAGCTGAGCAAGGCTCTTGGTCTTCTTCCTTTAGCCACAGTAGGTCTTTCTGCAGGAATAATTGAAGAAATTGAAAAGCTATGTGACAATATGCAGGAAGCTGGGTTTAAGGCAGCTGTTGCAGAAGAAGAGATTTTAGAGAAAATTGAGTCAGGGATAAGGGAAAACAATGTTAATCGCTCCTATGCCAATAACTTGCTGATTCTCATTGCAGAGGCTGTTGGGATTACAAATGAGAGGTCAACAGTGAAGATGGAACTTGAAGAATTTAAGAAAGAAATTGAGAATGCCCGTGTTAAGAAGGAATTGGCTGAAGCTATGCAAATGGATCAGATCATTGCTTTGTTGGAAAGGGCTGATGCAGCCTCATCACCTAGGGAAAGGGAACTCAAATACTTTGCCAAACGCCAATCTTTGGGTAATCAAATCTTGGAGCCTTTACAGTCATTTTATTGCCCCATCACCAAGGAGGTTATGGTGGACCCTGTAGAAACATCATCAGGGCAGACATTTGAGAGAAGTGCAATAGAGAAGTGGTTTGCTGAAGGAAATACATTGTGTCCTCTGACCATGATTTCTTTAGATACATCAATTTTGAGACCTAATAAAACTTTGAAACAATCTATAGAAGAATGGAAGGATAGAAATACAATGATTACAATTGCCACAGTAAAAGAAAAAATCCAGTCGGGAGATGATGATGAAGCGCTCCATGGTCTGAGAACTATCCAGGATTTGTGTGAACAAAAAGACCAACACAAGGAATGGGTGATACTGGAGAATTATATACCAGTTCTTATCCAAATTCTTGGTTCAAGAAACCGTGATATAAGGAATCATGCTCTTGCCATCCTTTGCATGCTGGCAAAGGATAATGAAGAGGCTAAGGAAAGAATTGCAACCGTTGATAATGCAATTGAATCAATTGTTCATTCTCTTGGACGTCGTATAGGGGAAAGGAAGTTAGCAGTGGCATTACTGCTCGAATTATCCAAATATGATTTAGCACGAGAACACATTGGAAAAGTTCAAGGTTGCATACTGCTATTGGTGACTATGTCTAGTGGGGATGACAATCAAGCTGCTAGAGATGCAACAGAGCTATTAGAGAATCTTTCATGCTCTGATCAGAATGTTATTCAGATGGCAAAGGCAAATTATTTCAAACATTTATTGCAGCGTCTCTCCACAGGACCAGATGATGTAAAGATGATTATGGCCAGAACTTTAGCAGAGATGGAGTTAACCGACCACAATAAGGAGGCCTTGTTTGATGGTGGTGTACTAGCTCCTCTTCTTCACTTGTTCTTGCATAATGATCTTCAGTTGAAAACAGTGGCCGTCAAGGCTCTTCGGAATCTATCCAGTTTAAAGAAAAATGGACTAGAAATGATTAGACAAGGGGCTGCACGACCATTACTTGACCTCCTTTTCCATCGCAGCCTACCAACCTCAAGTTTGTGGGGAGATGTAGCAGCCATAACTATGCAACTTGCTACATCAACTATCTCTCAAGATGCCAAAACGCCAGTTTTATTACTAGAATCTGATGATGATGTTTTTAACCTCTTTGGTTTAATTAGTGTCACACAGCCTGATGTGCAACAAAACATTATCCGGACCTTTTATACCTTGTGTCAGTCGCAGTCACACTCGGCTTCATATATCAGGACCAAGCTAAATGAGCAGTGCTCAGCTATACCAGAATTGGTTCGGTTGTGTGAGAATGAAAATCTAAACCTACGAGCAAGTGCTGTAAAGTTGTTTTCTTGCTTGGTAGAGAGTTGTGATGAAGCCATCATACTGGAGAATGTTGATCAGAAATGCATCAATACTTTACTCCAGATCCTTAAATCTTCATCTGATGAAGAGGAACTACTTTCTGCCTTGGGAATAATATGCTATCTTCCAGAAAATAATCAGATAACTGAATGGCTTCTGGATGCTGGTGCACTGCCAGTCATTTATAAGCATATCCAAGAAGGGAGAGACAGGGATCTTCAAAGGAGTAATTTAGTAGAGAATGCCACTGGTGCCCTATGTCGTTTTACAGTTCCAACAAACTCAGAGTGGCAAAAGAGTGCAGCTGAAACTGGGATTATAACTGTTTTAGTACAGTTGCTTGAAAGTGGAACCTCCTTGACAAAACAACGTGTGGCACAGTCTCTTGCTCAATTTTCTAGAAGTTCAGTTCGGCTCAGCAGGCCAATTGCCAATCGCAAAGGACTATGTTGCTTCTCAGCTCCAGCAGAAATTAGCTGTGGAGTTCATGGAGGAATATGCACAGTCAAATCATCATTTTGCCTTTTGGAGGCTGAAGCAGTGGGACCACTCACAAGGACTCTTGGGGAATCTGATCCTGGAGTTTGTGAGGCTTCTTTGGATGCTCTATTAACATTAATTGAAGGTGAAAGACTACAGAGTGGTAGTAAAGTGCTTGCAGAAGCAAATGCCATACCACTCATAATAAGATTTCTTGGTTCTTCCTCCCCTGGGTTGCAAGAGAAGTCTCTACATGCTTTGGAAAGGATTTTTAGGCAAGTGGAGTTCAAACAAAAGTATGGAGCCTCGGCTCAAATGCCTCTAGTTGACTTAACACAGCGGGGTAATGGTAGTGTTAGATCCATTTCAGCTAGAATATTGGCACACTTGAACGTGCTTCATGATCAATCTTCATATTTCTAA 3024 0.4084 MMVVDVFTSGPTTTVISQIIDTIGEFLYYASDVLVKKESFKELAAYMERIVPILKELRKEKVSDSETFNRAVEVMNGEIKNAKLLAQECSKKSKVYLLMNCRSIVKRLEDHTKELSKALGLLPLATVGLSAGIIEEIEKLCDNMQEAGFKAAVAEEEILEKIESGIRENNVNRSYANNLLILIAEAVGITNERSTVKMELEEFKKEIENARVKKELAEAMQMDQIIALLERADAASSPRERELKYFAKRQSLGNQILEPLQSFYCPITKEVMVDPVETSSGQTFERSAIEKWFAEGNTLCPLTMISLDTSILRPNKTLKQSIEEWKDRNTMITIATVKEKIQSGDDDEALHGLRTIQDLCEQKDQHKEWVILENYIPVLIQILGSRNRDIRNHALAILCMLAKDNEEAKERIATVDNAIESIVHSLGRRIGERKLAVALLLELSKYDLAREHIGKVQGCILLLVTMSSGDDNQAARDATELLENLSCSDQNVIQMAKANYFKHLLQRLSTGPDDVKMIMARTLAEMELTDHNKEALFDGGVLAPLLHLFLHNDLQLKTVAVKALRNLSSLKKNGLEMIRQGAARPLLDLLFHRSLPTSSLWGDVAAITMQLATSTISQDAKTPVLLLESDDDVFNLFGLISVTQPDVQQNIIRTFYTLCQSQSHSASYIRTKLNEQCSAIPELVRLCENENLNLRASAVKLFSCLVESCDEAIILENVDQKCINTLLQILKSSSDEEELLSALGIICYLPENNQITEWLLDAGALPVIYKHIQEGRDRDLQRSNLVENATGALCRFTVPTNSEWQKSAAETGIITVLVQLLESGTSLTKQRVAQSLAQFSRSSVRLSRPIANRKGLCCFSAPAEISCGVHGGICTVKSSFCLLEAEAVGPLTRTLGESDPGVCEASLDALLTLIEGERLQSGSKVLAEANAIPLIIRFLGSSSPGLQEKSLHALERIFRQVEFKQKYGASAQMPLVDLTQRGNGSVRSISARILAHLNVLHDQSSYF. 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11283 1007 Coils Coil 193 220 - -
Seca3g11283 1007 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1007 - -
Seca3g11283 1007 Gene3D - 632 857 IPR011989 -
Seca3g11283 1007 SUPERFAMILY RING/U-box 250 331 - -
Seca3g11283 1007 Gene3D - 13 127 IPR036537 GO:0007166
Seca3g11283 1007 SMART arm_5 446 487 IPR000225 GO:0005515
Seca3g11283 1007 SMART arm_5 363 403 IPR000225 GO:0005515
Seca3g11283 1007 SMART arm_5 919 959 IPR000225 GO:0005515
Seca3g11283 1007 SMART arm_5 752 798 IPR000225 GO:0005515
Seca3g11283 1007 SMART arm_5 709 751 IPR000225 GO:0005515
Seca3g11283 1007 SMART arm_5 529 569 IPR000225 GO:0005515
Seca3g11283 1007 CDD RING-Ubox_PUB 263 312 IPR045210 -
Seca3g11283 1007 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Seca3g11283 1007 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 540 582 IPR000225 GO:0005515
Seca3g11283 1007 SUPERFAMILY ARM repeat 679 997 IPR016024 -
Seca3g11283 1007 Pfam U-box domain 263 329 IPR003613 GO:0004842|GO:0016567
Seca3g11283 1007 Pfam Armadillo/beta-catenin-like repeat 530 569 IPR000225 GO:0005515
Seca3g11283 1007 Gene3D - 337 631 IPR011989 -
Seca3g11283 1007 Gene3D - 875 1005 IPR011989 -
Seca3g11283 1007 CDD MLKL_NTD 37 146 - -
Seca3g11283 1007 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 336 IPR013083 -
Seca3g11283 1007 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Seca3g11283 1007 SUPERFAMILY ARM repeat 333 780 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11283 Seca-Chr3 260489945 260497321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11283 261 1007 U-box Gene Family AT1G76390 28.319 1.29e-63 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11283 - - psat:127076110 1591.25