Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11280 ATGCTGATGTCTTTTATCATCATTTATGCTTCTAATGCTACTTATGTTGCAGGTTTTGCTTTTGTCTATTATGAGGATGAGCGTGATGCTGAAGAGGCAATTCGTGCACTAGACAATTTTCCATTTGGTTATGACAAGCGGCGGCTATCTGTGGAGTGGGCTAGGGGTGAACGTGGTCGGCATCGTGATGGCTCAAAGGCAAACCAAAGGCCCACAAAAACCCTATTTGTGATTAACTTTGACCCAATTCGTACTAGAGTTCGTGATATAGAAAAACACTTTGAACCTTATGGGAAGATTCTTCATGTTCGAATTCGTCGGAACTTTGCATTCGTGCAGTTTGAAACACAAGAAGATGCTACTAAAGCTTTAGAGTGTACAAATATGAGTAAGATACTGGACAGAGTGGTGTCTGTGGAGTATGCTCTGAGAGATGATGGTGAGAGGGGTGACAATTATGGCAGTCCTAGAAGAGGAGGGGGTTATGAGAGATCACCCAGTCCAGGTTATCGCCGGAGGCCAAGTCCTGACTATGGTCGTCCACGCAGTCCTGTGTATGATAGGTACAATGGACCAGACAGGCGTAGGAGTCCTGATTATGGCAGGCCCAGGAGTCCTGATTATGGCAGGCCTAGAAGTCCTGAATATGGTAGATTTCGCAGCCGCTCCCCAGTACGAAGGTCAAGAACTTAG 693 0.4589 MLMSFIIIYASNATYVAGFAFVYYEDERDAEEAIRALDNFPFGYDKRRLSVEWARGERGRHRDGSKANQRPTKTLFVINFDPIRTRVRDIEKHFEPYGKILHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNYGSPRRGGGYERSPSPGYRRRPSPDYGRPRSPVYDRYNGPDRRRSPDYGRPRSPDYGRPRSPEYGRFRSRSPVRRSRT. 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11280 230 Gene3D - 4 67 IPR012677 -
Seca3g11280 230 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 144 IPR000504 GO:0003723
Seca3g11280 230 MobiDBLite consensus disorder prediction 146 230 - -
Seca3g11280 230 SUPERFAMILY RNA-binding domain, RBD 10 146 IPR035979 GO:0003676
Seca3g11280 230 FunFam Serine/arginine-rich splicing factor RS31 65 155 - -
Seca3g11280 230 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 42 IPR000504 GO:0003723
Seca3g11280 230 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 137 IPR000504 GO:0003723
Seca3g11280 230 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 56 IPR000504 GO:0003723
Seca3g11280 230 CDD RRM2_AtRSp31_like 74 143 - -
Seca3g11280 230 SMART rrm1_1 74 140 IPR000504 GO:0003723
Seca3g11280 230 MobiDBLite consensus disorder prediction 187 222 - -
Seca3g11280 230 Gene3D - 68 152 IPR012677 -
Seca3g11280 230 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 18 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11280 Seca-Chr3 260470876 260474098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11280 18 146 Eukaryotic Initiation Factors Gene Family AT1G49760 26.573 1.28e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11280 K12893 - gmx:100797709 346.665