Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11272 ATGGGAAGAGCTCCTTGTTGTTCTAAAGTTGGTTTGCACAAGGGTCCATGGACTCCTAGAGAAGATGCATTACTTACCAAATATATTCAAGCTCATGGAGAAGGCCAATGGAAATCCCTACCCAAAAAAGCTGGGCTTCTTAGATGTGGGAAAAGTTGCAGATTGAGATGGATGAATTATCTGAGGCCAGATATAAAGAGAGGGAACATAACAGCTGAAGAAGATGATCTTATCATTAGAATGCATTCACTTCTTGGAAACAGATGGTCCCTCATAGCTGGAAGATTACCAGGTCGCACAGATAATGAAATTAAGAACTATTGGAATACCCATCTCAGTAAGAAGCTAAAAAATCATGATGATCCTGACTCAGAGAATAACGTAGCAGATCCAGAACAAGAGCCCAAGAAAAAGAGTGAGAAGAAGAAAAAGAACAATAATAAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGGACAAAAACAGAGGAGGAAATAATGCAGAGGAAGAGAAGACACAAGTGTATCTACCAAAACCCATTAGAGTTAAGGCTTTGTCTCTACCCAGAACGGATAGTGGTAATTCCTTCACAATGGAATCCAATTCATCAACGAGCCAAGAGAAAGAAGAAAGCCCAGGCCCAATAATAGATGACATGATTTATGACATGGGAGAAAATGAAGATTTTGGCATCTTTGGTGACGATCATGAACTAGTCAACGACATTGAATTCCAGTCTTATATTCCCACGGAACATGGTACTGGCACGCTAGAGAAACTCTATGAAGAGTACTTGCAACTCTTGAACATGGACGATTGCCATTTCCAATTGGATTCCTTTGCTCAATCTTTATTGGAGGAATGA 864 0.4028 MGRAPCCSKVGLHKGPWTPREDALLTKYIQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITAEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLKNHDDPDSENNVADPEQEPKKKSEKKKKNNNKKQKQKQKQKQDKNRGGNNAEEEKTQVYLPKPIRVKALSLPRTDSGNSFTMESNSSTSQEKEESPGPIIDDMIYDMGENEDFGIFGDDHELVNDIEFQSYIPTEHGTGTLEKLYEEYLQLLNMDDCHFQLDSFAQSLLEE. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11272 287 FunFam Myb transcription factor 11 67 - -
Seca3g11272 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca3g11272 287 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 207 - -
Seca3g11272 287 CDD SANT 16 61 IPR001005 -
Seca3g11272 287 MobiDBLite consensus disorder prediction 115 214 - -
Seca3g11272 287 MobiDBLite consensus disorder prediction 115 140 - -
Seca3g11272 287 SMART sant 13 63 IPR001005 -
Seca3g11272 287 SMART sant 66 114 IPR001005 -
Seca3g11272 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca3g11272 287 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca3g11272 287 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca3g11272 287 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca3g11272 287 Gene3D - 14 66 - -
Seca3g11272 287 Gene3D - 71 116 - -
Seca3g11272 287 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca3g11272 287 Coils Coil 137 161 - -
Seca3g11272 287 CDD SANT 71 112 IPR001005 -
Seca3g11272 287 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca3g11272 287 MobiDBLite consensus disorder prediction 188 210 - -
Seca3g11272 287 MobiDBLite consensus disorder prediction 141 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11272 Seca-Chr3 260377798 260378929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11272 1 116 MYB Transcription Factor Family AT5G49330 75.000 5.88e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g11272 Myb_DNA-binding 1.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11272 K09422 - gmx:100803345 375.17