Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11259 ATGGAGCAACATTTGCATTGCGCCGCCGAAGATGACGTGGCAGCATCATCCGCAGCCTCATCCACTACCACTAGCTCAGCCGTGAAATCCGGTAACGAACGCGGCGGCACGCGCCACCCTGTCTACCGCGGCGTCCGGAAGCGGCGATGGGGAAAATGGGTTTCGGAAATTCGGGAGCCTCGGAAGAAGTCGCGCATATGGCTTGGGTCTTTTCCGGCGCCGGAGATGGCGGCGAAGGCTTACGACGTCGCCGCCTACTGTCTCAAGGGAAGAAAGGCGCAGCTCAATTTCCCCGACGAGGTGCACCACCTTCCGCCGCTGCCTCCGCCGTCCGCCTGCACCGCTAGGGACATTCAAGAGGCGGCGGCTAAGGCGGCTCGCATGATGGTCAAGGCCGCTGCCGTCGACTCGCCGGAGAAGAGCAGCATTGGTTCCGATGGCGACAGCGGCGGCGACGATTTTTGGGGCGAGATAGAGCTGCCGGAGCTCATGAACAGCACGTGGTGGACTTCCTCCGCTGACATCACGCCGTGGCCGGAAGTTGAGCTTCCGCCGCAGCAACCCTTCACGGCGTGCCTATAG 582 0.6271 MEQHLHCAAEDDVAASSAASSTTTSSAVKSGNERGGTRHPVYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAYDVAAYCLKGRKAQLNFPDEVHHLPPLPPPSACTARDIQEAAAKAARMMVKAAAVDSPEKSSIGSDGDSGGDDFWGEIELPELMNSTWWTSSADITPWPEVELPPQQPFTACL. 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11259 193 MobiDBLite consensus disorder prediction 1 42 - -
Seca3g11259 193 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Seca3g11259 193 PRINTS Ethylene responsive element binding protein signature 80 100 IPR001471 GO:0003700|GO:0006355
Seca3g11259 193 FunFam Ethylene-responsive transcription factor 2 40 99 - -
Seca3g11259 193 SUPERFAMILY DNA-binding domain 41 100 IPR016177 GO:0003677
Seca3g11259 193 MobiDBLite consensus disorder prediction 15 32 - -
Seca3g11259 193 MobiDBLite consensus disorder prediction 134 156 - -
Seca3g11259 193 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Seca3g11259 193 Pfam AP2 domain 40 90 IPR001471 GO:0003700|GO:0006355
Seca3g11259 193 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 19 165 - -
Seca3g11259 193 CDD AP2 42 99 IPR001471 GO:0003700|GO:0006355
Seca3g11259 193 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Seca3g11259 193 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11259 Seca-Chr3 260171612 260172193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11259 22 166 AP2-EREBP Transcription Factor Family AT1G01250 63.399 3.59e-53 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g11259 AP2 2.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11259 K09286 - gmx:100802845 261.536