Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11257 ATGGGAAGAGCTCCTTGTTGTTCAAAAGTTGGGTTGCACAAGGGTCCATGGACTCCTAGAGAAGATGCATTGCTTACCAAATATATTCAAGCTTATGGAGAAGGCCAATGGAAATCGCTGCCCAAAAAAGCTGAAATAAAAAAAAAAACTGTGGTTGATGCAGGACTTCTTAGATGCGGGAAAAGTTGCAGATTGAGATGGGTGAACTATCTGAGACCAGACATAAAGAGAGGGAACATAACAGCCGAAGAAGATGATCTTATCATTAGAATGCATTCACTTCTTGGAAACAGATGGTCCCTCATAGCTGGAAGATTACCAGGACGCACTGATAATGAAATTAAAAATTATTGGAATACCCATCTCAGTAAGAAGCTCAAAAGTAATCAAGACGTCCCTAATCAACAAGAAGCTGATGCATGCAGTGCTAAGAAAAAGAAGAACAATAATAATAACAAGAAGAAGAAGCGAGACAAGAACAAATTAGAGGCAAATAATGCAGAGGCACCGAAGATCCAAGTTTATATGCCAAAACCCATTAGGGTTAAGGCTTTGTCATCTAATAATTTACCGAGAACGGATAATGGCTGCTCCTTGAGTACCGTTGATATTCTCAATTCATCAAGTTGTGCATCAACAACAAACCTAGAATTAAGTCATGAGGGAAGAAAAGAAGAAGTAATGGTAAATAATAATAATGTGGTATGGGAAGATGGTGAGCAACATGATGATATATTAAACATAGAATGGGAGTTATGCCATGTCCCCACGGCCACGTTAGAGAAACTGTATGAAGAGTACTTGCACCTCTTGACCATGGACGTATGA 828 0.3913 MGRAPCCSKVGLHKGPWTPREDALLTKYIQAYGEGQWKSLPKKAEIKKKTVVDAGLLRCGKSCRLRWVNYLRPDIKRGNITAEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLKSNQDVPNQQEADACSAKKKKNNNNNKKKKRDKNKLEANNAEAPKIQVYMPKPIRVKALSSNNLPRTDNGCSLSTVDILNSSSCASTTNLELSHEGRKEEVMVNNNNVVWEDGEQHDDILNIEWELCHVPTATLEKLYEEYLHLLTMDV. 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11257 275 SUPERFAMILY Homeodomain-like 11 118 IPR009057 -
Seca3g11257 275 ProSiteProfiles Myb-like domain profile. 9 71 IPR001005 -
Seca3g11257 275 Coils Coil 145 165 - -
Seca3g11257 275 Pfam Myb-like DNA-binding domain 77 122 IPR001005 -
Seca3g11257 275 Pfam Myb-like DNA-binding domain 14 71 IPR001005 -
Seca3g11257 275 CDD SANT 16 71 IPR001005 -
Seca3g11257 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 71 IPR017930 -
Seca3g11257 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 126 IPR017930 -
Seca3g11257 275 MobiDBLite consensus disorder prediction 125 170 - -
Seca3g11257 275 CDD SANT 81 122 IPR001005 -
Seca3g11257 275 Gene3D - 14 76 - -
Seca3g11257 275 Gene3D - 81 171 - -
Seca3g11257 275 FunFam MYB-related transcription factor 13 76 - -
Seca3g11257 275 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Seca3g11257 275 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 200 - -
Seca3g11257 275 SMART sant 13 73 IPR001005 -
Seca3g11257 275 SMART sant 76 124 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11257 Seca-Chr3 260145480 260146900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11257 1 126 MYB Transcription Factor Family AT5G49330 69.048 3.89e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g11257 Myb_DNA-binding 1.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11257 K09422 - gmx:100803345 281.567