Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11256 ATGAAGATTGAGATGGGGTTAGGAGGAGGTGGGGGGTTGTGGAATGAAGATGAAAAGGCCATGGTGGTGGAGGTTCTTGGCGCTACAGCTTTTGATTACTTGATTGCTAACTCTGTCTCGAATGAGAATCTGTTAATGGCAATTGGGAGTGGTGAGAATCTGCAGAACAAGCTTTCGGATCTCGTGGAGCGCCCCAACGTGTCCAACTTCAGCTGGAACTATGCAATCTTCTGGCAAATTTCACAGTCCAAATATGGGGATTGGGTTCTGGGTTGGGGAGATGGGTGTTGCTGGGAGCCAAAGGAAGAAGAAGAAGGTGGAGTCAGAGGGGTTCTCAGCCTTAGCCTTGATGATGAGAAGCAACAGAGGATGAGGAAGAAGGTGCTGCAGAAGCTACACACAACATTTGGGGGTTCAGATGAGGACAATTATGCTTTTGGACTGGACCGAGTCACAGACACAGAAATGTTCTTTCTTGCTTCCATGTACTTCTCCTTTCCCCCTGGCCATGGTGGACCAGGTAAGTGCTTTGCTTCAGGTAAGCACTTGTGGCTTTCTGATGCTTTGAAACCTACTTCTGATGATTACTGTGTGAGGTCTTTCTTGGCCAAATCTGCTGGAATTCAGACTATTGTTTTAGTCCCTACTGATATTGGTGTGGTGGAGATGGGTTCTGTTAGAACAGTGGAGGAGAGCTTTGAATTGTTGAAGGTTGTTAAATCTGTGTTCTCAGCACATTCATCATTTCACAGGTCTAATGAGAACACCCCTTTTTCTAGTTTGGCAATTGGGGATAATAACAATAATAGTAATAGTACAAATAACCATAATTACCATAATAGAGTAGAGGGAACTGGAGTTCCAAAGATTTTTGGGCAGGATTTGAATCCTGTGACCCCTTTTAGGGAGAAACTTGCTATCAGGAAAATGGAGGAGAGGCCATGGGGAGGAGGCCATCCTAATGGGAAGAGCATTAGCATTCCAAATGGTATTCATGGTTCTAGTTGGGGAGCTACTCAAGTTGTGAGGCAGCCTGAACTTTTTGCTCCTAGGCCCACCACAAGCAATGTGCCTGAGCTAGCAAATGGAGCAAGGCATGATTTCCTGCTTAACAACTATCAACAACAGCGGCAGATGCAGCATATGCAAATTGATTTCTCAGGAGCCACATCAAGGCCTTCTGTGAGAACAATCATTACTGAACCTGAGCTTTCTGAAGTTGAAGGCACATGTAAGGAGGAGAGACCAAGTGCCACTGATGATAGGAGGCCAAGGAAGCGGGGCAGAAAGCCAGCTAATGGAAGGGAGGAACCCCTCAATCATGTAGAGGCTGAGAGGCAAAGGCGTGAGAAGCTGAACCAGCGTTTCTATGCCTTAAGATCTGTTGTGCCAAATATCTCCAAGATGGACAAGGCATCTCTGTTGGGAGATGCTATTTCTTACATCAATGAGCTTCAGGTAAAACTCAGGATGTTGGAGTCTGAGAGAGAGAGATTTGGAAGCACTTCTAGAGATGGATCAGCATTGCAGGCCAACTCAGGAGCAGAAAACCATCAGCATAGAGCTCCTCCTGATGTGGATATTGAAGCTTCACAAGATGGGGTCATTGTAAAGGTGAGCTGTCCCATTGATGTTCACCCTATTGCAAAAGCCATCCAAGCTTTCAAAGAGGCAGAGGTCAATGTTTTAGAGTCAAAACTCACTGCTGCAAATGATACTGTCATGCACACATTTATAATCAAATCCCAAGGACCTGAGCAGCTGACAAAGGAGAAGTTGATTGCAGCATTTTCCCCAGAATCCAACTCCTTAAAGCCATTACCATCTGTTGGGTAG 1836 0.4559 MKIEMGLGGGGGLWNEDEKAMVVEVLGATAFDYLIANSVSNENLLMAIGSGENLQNKLSDLVERPNVSNFSWNYAIFWQISQSKYGDWVLGWGDGCCWEPKEEEEGGVRGVLSLSLDDEKQQRMRKKVLQKLHTTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPPGHGGPGKCFASGKHLWLSDALKPTSDDYCVRSFLAKSAGIQTIVLVPTDIGVVEMGSVRTVEESFELLKVVKSVFSAHSSFHRSNENTPFSSLAIGDNNNNSNSTNNHNYHNRVEGTGVPKIFGQDLNPVTPFREKLAIRKMEERPWGGGHPNGKSISIPNGIHGSSWGATQVVRQPELFAPRPTTSNVPELANGARHDFLLNNYQQQRQMQHMQIDFSGATSRPSVRTIITEPELSEVEGTCKEERPSATDDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYINELQVKLRMLESERERFGSTSRDGSALQANSGAENHQHRAPPDVDIEASQDGVIVKVSCPIDVHPIAKAIQAFKEAEVNVLESKLTAANDTVMHTFIIKSQGPEQLTKEKLIAAFSPESNSLKPLPSVG. 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11256 611 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 54 243 IPR025610 -
Seca3g11256 611 Gene3D - 429 501 IPR036638 GO:0046983
Seca3g11256 611 MobiDBLite consensus disorder prediction 399 447 - -
Seca3g11256 611 Pfam Helix-loop-helix DNA-binding domain 440 486 IPR011598 GO:0046983
Seca3g11256 611 MobiDBLite consensus disorder prediction 503 517 - -
Seca3g11256 611 Coils Coil 482 502 - -
Seca3g11256 611 FunFam Transcription factor bHLH13 429 503 - -
Seca3g11256 611 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 436 485 IPR011598 GO:0046983
Seca3g11256 611 CDD bHLH_AtAIB_like 433 498 - -
Seca3g11256 611 MobiDBLite consensus disorder prediction 249 285 - -
Seca3g11256 611 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 439 499 IPR036638 GO:0046983
Seca3g11256 611 MobiDBLite consensus disorder prediction 498 525 - -
Seca3g11256 611 PANTHER MYC 41 596 IPR045084 GO:0003700|GO:0006355
Seca3g11256 611 MobiDBLite consensus disorder prediction 249 281 - -
Seca3g11256 611 SMART finulus 442 491 IPR011598 GO:0046983
Seca3g11256 611 MobiDBLite consensus disorder prediction 406 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11256 Seca-Chr3 260100345 260102180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11256 10 611 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 50.569 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g11256 bHLH-MYC_N 6.5e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11256 - - gmx:100807078 838.95