Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11241 ATGATAATTAAGCGGACGAAGAAAATTGAAATGCCGAAACTGAAACGGTGTAAACTGGAGGAGCCCGATTCCGAGGGCTATGATGGGCGTTCAGCGATTCAGAAGAAGCGTAAGGTGAATGGGTTTTACTCTTTGGCTATGCCAGGTGATGCTGAAGATTTCAGCAGTGGTTCTGGTTCTTGGAGCAGTGAAGGTTCGCATTGGGGTGGTGGTGGTGGTGAGGTTCAGTCCAATTCAAATTCTGCGCCATTGGATGGTAAGACAGCGAAACACCGGGGCTCTGAAGGGCCTAGGCCTCCCTTGTTGCGGTCCTCACGTGGCCGCCTTCAGATGCTTCCGTCCAGGTTCAGTGACTCGGTTCTTGATTCATGGAAGAATCGAGGAATCAAAACGGAGGACGAAGACTCCAGCTTTGAAGATGATAAGAGTTTTGAAGAAGATGATACGGCTGGCATTAGTGCAGAGGAATTTGTAAAATTTGAGAAGAGTGATAGCCATGGATTGAAAAATTCTGTGTGTTATCCGTGTCCTGAAGTGAGGGTTGACAAAAGGGAGCGTGCTGATTCGTCTAGTGTTGGTAGAAAGACTGTGAAGACTGAGAGTAACACGTCTGGTCTTAGTTTTGAAGGTGTGGACCAAAAGCCTAATGGGAATGCTGAAAAGAGGAAAGAGATTTACAAGCCAGAGGATTTTGCTTTGGGTGATATAGTTTGGGCTAAATGTGGTAAGAGATATCCGGCGTGGCCTGCTGTGGTGATTGATCCCATCTTGGAAGCTCCCAAATCCGTTCTGAGCTGTTGTGTTCCCGGTGCACTTTGCGTGATGTTTTATGGTTATTCAAAAAATGGAACGCAAAGGGACTACGCGTGGGTGAAGCAGGGAATGATTTTCCCCTTCCAGGAATTCATGGAAAGATTCCAGGGGCAGACCCGGTTGTACAAGAGCAAACCGAGTGACTTTCGCATGGCACTGGAGGAGGCAATGTTGGCAGAAGATGGTATTCTGGAATCACAGTTGGGAGGAGCAGAGGAAGTAACTAATTTAAAAGCTCATCCTGATGGACTTATAGAGACCACGGGTTCATGTGTTGATCAGGAATATTACTGCCAGGATCCGGATGCAAGATATTGTGCTGGCTGTGGTTTGTTGTTGCCATGCAAAACCATGAAGAAGATTAAGGATTCAAGTTATGCACCTCAATTTTATTGCAAACATTGTGCCAAGCTACGAAAATCTAAACAATATTGTGGCATTTGCAAAAAGATTTGGCATCATTCAGATGGTGGGAATTGGGTATGTTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGATAAAATTTCCACCAAACTTTTCAAGGATCTGGAAAATACAGATTATTATTGTCCAGATTGCAAAGGAAAATTAAATTGTAAATTAGCATCACAAACATACAAGTCAAAAACCAAATCAGTAGAGAATTGCCAAAAAACTGTGGTACCTGATAAGGTACTGGTGGTGTGCAATGGCATGGAAGGAATTTACATCCCAAATCTTCATTTAGTTATGTGCAAGTGTGGCTCTTGTGGTTCAAGGAAGCAGACACTGAGTGAATGGGAAAAGCATACAGGTTGCAGAGCCAAAAAATGGAAACATAGTGTGAAAGTGAAAAGCTCAATGATAACACTAGAAAAATGGATGTAG 1686 0.4383 MIIKRTKKIEMPKLKRCKLEEPDSEGYDGRSAIQKKRKVNGFYSLAMPGDAEDFSSGSGSWSSEGSHWGGGGGEVQSNSNSAPLDGKTAKHRGSEGPRPPLLRSSRGRLQMLPSRFSDSVLDSWKNRGIKTEDEDSSFEDDKSFEEDDTAGISAEEFVKFEKSDSHGLKNSVCYPCPEVRVDKRERADSSSVGRKTVKTESNTSGLSFEGVDQKPNGNAEKRKEIYKPEDFALGDIVWAKCGKRYPAWPAVVIDPILEAPKSVLSCCVPGALCVMFYGYSKNGTQRDYAWVKQGMIFPFQEFMERFQGQTRLYKSKPSDFRMALEEAMLAEDGILESQLGGAEEVTNLKAHPDGLIETTGSCVDQEYYCQDPDARYCAGCGLLLPCKTMKKIKDSSYAPQFYCKHCAKLRKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISTKLFKDLENTDYYCPDCKGKLNCKLASQTYKSKTKSVENCQKTVVPDKVLVVCNGMEGIYIPNLHLVMCKCGSCGSRKQTLSEWEKHTGCRAKKWKHSVKVKSSMITLEKWM. 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11241 561 ProSiteProfiles Zinc finger PHD-type profile. 413 469 IPR019787 -
Seca3g11241 561 MobiDBLite consensus disorder prediction 46 149 - -
Seca3g11241 561 Pfam PHD-finger 415 468 IPR019787 -
Seca3g11241 561 CDD PWWP_AtATX3-like 234 333 - -
Seca3g11241 561 SMART PWWP_4 231 300 IPR000313 -
Seca3g11241 561 SUPERFAMILY Tudor/PWWP/MBT 224 334 - -
Seca3g11241 561 MobiDBLite consensus disorder prediction 194 211 - -
Seca3g11241 561 MobiDBLite consensus disorder prediction 184 222 - -
Seca3g11241 561 SUPERFAMILY FYVE/PHD zinc finger 413 474 IPR011011 -
Seca3g11241 561 SMART PHD_3 415 467 IPR001965 -
Seca3g11241 561 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 473 IPR013083 -
Seca3g11241 561 Pfam PWWP domain 234 330 IPR000313 -
Seca3g11241 561 Gene3D - 220 336 - -
Seca3g11241 561 CDD PHD_TCF19_like 416 466 - -
Seca3g11241 561 ProSiteProfiles PWWP domain profile. 233 302 IPR000313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11241 Seca-Chr3 259924552 259934098 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11241 358 440 EF-hand Containing Proteins AT5G28340 51.807 2.60e-20 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca3g11241 PWWP 1.2e-16 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11241 - - gmx:100797346 799.66