Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11238 ATGGGCATCTTGATCTTGAAGGTCCTTTTTCACTTCTTCATCTTTCCAGTCATATATGCCTGGAATGATTGCCAATTTTCTTTATGTGGTAACAATAGTATCCTTATTCGTTTCCCCTTTCAACTAGAAGGTGGGCAACATCCTTATTGTGGCTATCCTGGTTTCAACTTAATTTGTACCAATGATAGCAAAACAGTTCTAAAACTTCCATACTCTGGAGAATTCTATGTACGCAACATAAACTATCTCACCCAACAGATACGAGTGTACGACCCCGCTGATTGCCTTCCCAGACGTCTTCTAAGCCTCAATTTTTCAGATTCTCCCTTCACTGCCACTTTTAGTAGTAACTACACCTTCTTAAGCTGCTCTCAGAACGCAGGGTCACAATTCATTCCCATTGGCTGCCTCAGTAATTCCACAAATTTTGTATATGCCATCCCTTCAGTGAGCATGGCGGATTCGTTGCCTGTGTCTTGCTATGTTATTAAAAGGCTTTCAGTTCCAATTACAATGCCAGGACGATATGAGGAAAATCTCACAGATGTCCTTAGTGAAGATCTTCGATTAACATGGGATAAACCTGACTGCCGATATTGCGAATCACAAGAGCTAATGTGTGGATTTGAGAGCAGTAACAGCAATCGAGTTACCTGTTTATCTGATTTCCAAACAGATGATTCGCAACAAGGACTACGAGTTTTTAGAATTATTGCATTATGCATTAGTGGACCAGCTGCAGTGTTTGTTATTTTGATGGCAAGCTGTGTGTGCTACAATGACAGAATAACCAATGCTACAAGAAATGCAGCTTCCCTGAGGTCAGCACCAGCTGCAATATTACCAGAACCAACCATTGTAACTGTGGGTCTGGATGAGTCTACAATTGAATCTTATGAGAAGGTAGTACTTGGGGAGAGTCGAAGGGTGCCTGGACCCAATGGTGGATGTTGCTGGATATGTTTGTCAGAGTATAACAGCAAAGAGACAATCAGATGCATTCCTGAATGCAACCACTGTTTCCATGCTGACTGCATAGATGAGTGGCTTCGCATGAACAACACATGCCCAGTTTGCCGCAACTCTCCCTCCCCTTCTCCTTCTTCTGTTGTCTCCTCCATAAATCCTTAA 1131 0.4235 MGILILKVLFHFFIFPVIYAWNDCQFSLCGNNSILIRFPFQLEGGQHPYCGYPGFNLICTNDSKTVLKLPYSGEFYVRNINYLTQQIRVYDPADCLPRRLLSLNFSDSPFTATFSSNYTFLSCSQNAGSQFIPIGCLSNSTNFVYAIPSVSMADSLPVSCYVIKRLSVPITMPGRYEENLTDVLSEDLRLTWDKPDCRYCESQELMCGFESSNSNRVTCLSDFQTDDSQQGLRVFRIIALCISGPAAVFVILMASCVCYNDRITNATRNAASLRSAPAAILPEPTIVTVGLDESTIESYEKVVLGESRRVPGPNGGCCWICLSEYNSKETIRCIPECNHCFHADCIDEWLRMNNTCPVCRNSPSPSPSSVVSSINP. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11238 376 CDD RING-H2_EL5-like 317 360 - -
Seca3g11238 376 ProSiteProfiles Zinc finger RING-type profile. 318 360 IPR001841 -
Seca3g11238 376 SMART ring_2 318 359 IPR001841 -
Seca3g11238 376 Pfam Wall-associated receptor kinase C-terminal 160 220 IPR032872 -
Seca3g11238 376 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 364 IPR046948 -
Seca3g11238 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 365 IPR013083 -
Seca3g11238 376 Pfam Ring finger domain 318 360 IPR001841 -
Seca3g11238 376 SUPERFAMILY RING/U-box 317 364 - -
Seca3g11238 376 Pfam Wall-associated receptor kinase galacturonan-binding 24 91 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11238 Seca-Chr3 259915260 259918350 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11238 22 370 C3H Transcription Factor Family AT2G46495 45.763 1.06e-94 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11238 - - aprc:113851081 578.556