Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11236 ATGGCCATCTTGAAGCTGGTCCTTTTTCACTTGTTCATCTTTCAAGTCATATATGCCATAAATGATTGCCAATTTTCTTTATGTGGTAACAATAGTATCCTTATTCGTTTCCCCTTTCGATTAGAAGGTGTGCAACATAGTTATTGTGGCTATCCTGGTTTCAACTTAATTTGTACAAATGATAGCAAAACAGTTATAAAATTTCCATACTCTGGAGAGTTCTATGTGCGCAACATAAACTATCTCACACAACAGATACAAGTCTATGACCCTCATGATTGCCTTCCCAAACGTCTTCTAAGCCTCAATCTCTCAGGTTCTCCCTTCACTCCCATTTTCAGTCGTAACTACACCTTCATAAGCTGCACATCTCAGAAAGAAGGGTCACAATTCATTCCCATTGAGTGCCTCAGTAATTCAACAAGTTTTGTATATGCCATCCCTTCAGTGAACATGGCCTATTCACTACCTGATTCTTGCTATGTTATTAAAAGGCTTTCAAGTCCAGTTGCAAGGCCAGGATGGTATGAGGAAAATCTCAGAGATGACCTTAATGAAGAACTTAGATTAATGTGGGATAAACCTTACTGCAGATATTGTGAAGCACAGAGGCTAATGTGTGGATTTGAGAGCAATAGCAGCAGTAGAGTTATCTGTTCATCTGATTATCAAGCAGGTAATGCGAAACGTGGACATCGAGCCTTTAGGATCATCACATTATCCATTGTTGTACCAGCTGCCATATGTATGATTTTAATTGCAAGCTCTGTGTGCTACCGTGACAGAATAGGCAATGTCGTTGTTTTTCAGAGGTCTGCACCAGCTGCTGCAATATCACCTGAACCTGCCATTGTCACCACTGGTTTGGATGAGTCTACCATTGAATCTTATGAGAAGGTAATACTTGGGGAGAGTCGACGAGTACCTGGACCTAATGATGAATGCTGTTGGATATGCTTGTCAGAGTACAACAGCAAAGAGACAATCAAATTGATTCCTGAATGCAAACACTATTTGGTCATCTGCAAAGTAATGGGCATCTTGAAGTTCCTTTTTCACTTCTTCATCTTTCAAGTCATATATGCTTCAAATGACTGCCATTTTTCTTTATGTGGCAACAATAGTATCCTTATTCGTTTCCCCTTTCAACCAGAAGGTGAACAAAATCCTTATTGTGGCTATCCTGGCTTCAACTTAATTTGTACAAATGATAGCAAAACAGTTCTAAAACTTCCACACTCTGGAGAATTCTATGTAGGCAACATAAACTATCTCACACAACAGATACAAGTCTATGACCCTCATGATTGCCTTCCAAAACGTTTTCTGAGCCTCAATCTTTCAGATTCTCCCTTCACTGCCACTCTTAGTCGCAACTACACCTTCTTAAGCTGCTCATCTCAGAATACAGGGCCACAATTCATTCCCATTGAGTGCCTAAGTAATTCCACAAGTTTTGTATATGCCATTCCTTCAGTGAACATGTCCAATTCATTGCCTGATTCTTGCAATGTTATTAAAAGGCTTTCAGCTCCAATTGCAAGGCCAGGATGGTATGAGGAAAATCTCAGAGATGACCTTAGTGAAGATCTTCTATTAACATGGGATAAACCTGACTGCAGATATTGTGAATCACAAGAGCTAATGTGTGGATTTGAAAGCAGTAACAGCAATAGAGTGATCTGTTTCTCTGATTCCCAAACAGATAATGCGCAACGTGGACTTCAACTCTATAGAATAATGACATTATGCATTGCTATACCAGCTTCCATCTTTATTATTTTAATTGGATGCTGTGTGTGCTACCGAGACAGAATAGGCAATACTCCTCCCAGTCCCAGCAATAACGTTGCTGCAATATCACTGGAACCTGCCATTGCCACCACTGGTCTGGATGAGTCTACCATTGAATCATATGAGAAGGTAGTGCTTGGGGAGAGTCGACGAGTTCCTGGACCCAATGATGGATGTTGTTGGATATGCTTGTCAGAGTACAACAGCAAAGAGACAATCAAATTGATTCCTGAATGCAAACACTGTTTCCATGCTGACTGCATAGATGAGTGGCTTCGCATGAACAACACTTGCCCAGTTTGCCGCAACTCTCCCTACCCTCCTGCTATTACTTCCAGTACCAGTAACCCTTGA 2148 0.4074 MAILKLVLFHLFIFQVIYAINDCQFSLCGNNSILIRFPFRLEGVQHSYCGYPGFNLICTNDSKTVIKFPYSGEFYVRNINYLTQQIQVYDPHDCLPKRLLSLNLSGSPFTPIFSRNYTFISCTSQKEGSQFIPIECLSNSTSFVYAIPSVNMAYSLPDSCYVIKRLSSPVARPGWYEENLRDDLNEELRLMWDKPYCRYCEAQRLMCGFESNSSSRVICSSDYQAGNAKRGHRAFRIITLSIVVPAAICMILIASSVCYRDRIGNVVVFQRSAPAAAISPEPAIVTTGLDESTIESYEKVILGESRRVPGPNDECCWICLSEYNSKETIKLIPECKHYLVICKVMGILKFLFHFFIFQVIYASNDCHFSLCGNNSILIRFPFQPEGEQNPYCGYPGFNLICTNDSKTVLKLPHSGEFYVGNINYLTQQIQVYDPHDCLPKRFLSLNLSDSPFTATLSRNYTFLSCSSQNTGPQFIPIECLSNSTSFVYAIPSVNMSNSLPDSCNVIKRLSAPIARPGWYEENLRDDLSEDLLLTWDKPDCRYCESQELMCGFESSNSNRVICFSDSQTDNAQRGLQLYRIMTLCIAIPASIFIILIGCCVCYRDRIGNTPPSPSNNVAAISLEPAIATTGLDESTIESYEKVVLGESRRVPGPNDGCCWICLSEYNSKETIKLIPECKHCFHADCIDEWLRMNNTCPVCRNSPYPPAITSSTSNP. 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11236 715 Pfam Wall-associated receptor kinase galacturonan-binding 366 433 IPR025287 GO:0030247
Seca3g11236 715 Pfam Wall-associated receptor kinase galacturonan-binding 23 90 IPR025287 GO:0030247
Seca3g11236 715 CDD RING-H2_EL5-like 657 700 - -
Seca3g11236 715 Pfam Ring finger domain 658 700 IPR001841 -
Seca3g11236 715 SMART ring_2 658 699 IPR001841 -
Seca3g11236 715 ProSiteProfiles Zinc finger RING-type profile. 658 700 IPR001841 -
Seca3g11236 715 Pfam Wall-associated receptor kinase C-terminal 501 565 IPR032872 -
Seca3g11236 715 Pfam Wall-associated receptor kinase C-terminal 174 220 IPR032872 -
Seca3g11236 715 SMART ringv_2 657 700 IPR011016 GO:0008270
Seca3g11236 715 SUPERFAMILY RING/U-box 652 705 - -
Seca3g11236 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 621 704 IPR013083 -
Seca3g11236 715 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 348 703 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11236 Seca-Chr3 259905622 259914486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11236 366 705 C3H Transcription Factor Family AT2G25410 42.978 5.31e-86 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11236 - - aprc:113851081 552.362