Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11233 ATGACTGCAAAGGGACAGAAATTTGTGAGGTTTGAAGATTGGAAGTCAGAGCCATCATCTTTAAGTATAGAGAAGAATGATTCTACAAGTGACAAAACAAAAATTCAATCAAGTGGAAGTGGTGGATCAATAAAAAAATTGGTTTCTAGGTGCAATGTTCTTGATCCACAGGGGCCACTACTTCAGAAATGGAACAAGATTTTTGTAATAACATGTGTGATGGCAATCTCTGTGGACCCGCTGTTCTTTTACATCCCTGTGATTGATGACAATGGAAAATGCCTTGACTTGGATGGAAAATTGAAGATTACTGCTAGTGTTCTTCGCACATTCTTTGATCTTTTCTACATTCTTCACATCATCTTTCAGTTTCGAACTGGGTTCATTGCCCCTTCTTCACGTGTATTTGGAAGGGGTGAGCTGGTTGATGATCTTTCTGCCATAGTCATGAGATACTTAAGTTCTTACTTCATCATTGACATTCTATCAATTATTCCACTTCCTCAGATGGTCATTTTAGCTATCATTCCAATCCCAAAATGCTCAGTTCCATATGCAGCAAAGGATTTGTTGAAGTATACAATAATAGCTCAGTATGTGCCAAGAATTCTGCGGATCTATCCATTGTTCAAAGAAGTAACAAGCACTTCTGGCATATTGACTGAGACAGCATGGGCTGGAGCTGCTTATAATCTTTTTCTCTATATGCTAGCAAGTCATGTGGTTGGAGCTTTCTGGTTTTTGTTTTCAGTAGAATCAGAGGTGCGGTGCTGGCGCAGACAGTTGAAGAATACTGCATTCTCTCATGATTTCTACCTGAGCTGTGGACGAGGCACTCCTACTATTCTATCAATTCTCAATAGTAGTAGTTGTTGCCCTTACATTGATCCTGATGACATTGAAGACCAAACAGTTTTCAATTTTGGAATATTTATAGAAGCTCTAAAGTCTCGTGTGGTAGAGTCATCTACAGATTTTCCTCAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATGTAAGTTCTGTTGGGCAAAACCTCAAGACTAGTACTTATGTTTGGGAGATAATCTTTGCTATCTTCATTGCCACCTTTGGATTGGTTCTGTTTGCATTACTTATTGGAAACATGCAGAAATATCTACAATCTACAACTGTTAGAGTTGAAGAGATGAGAGTCAAAAGGAGGGATGCAGAACAGTGGATGTGCCACCGGATGCTACCTGATTTCTTGAAGCAAAGAATTAGAAGGTATGAACAATACAAATGGCAAGAAAATAGGGGTGTTGAGGAGGAGACATTAATTCGGAACCTCCCTAAAGATCTCAGAAGGGACATAAAGCGCCATCTTTGCTTAGATTTACTTAAAAAAGTGCCAATGTTTGAGAGCATGGATACACAGTTGTTGGATGCAATGTGTGATAGACTGAAGCCAGTCCTTTATACAGAGAAAAGTGACATTGTTCGTGAAGGAGATCCAGTTGATGAAATGCTCTTCATTATGCGTGGAAAACTTGCTACTGCCACTACAAATGGTGGGAGAACAGGTTTCTTCAACTCCTCTGTGCTCAAGGCTGGTGACTTCTGTGGAGAAGAGCTTTTGACATGGGCCTTGGATCCAAACTCCTCCTCAAATCTACCCATTTCAACTAGAACAGTGCAAACTATCTCAGAAGTTGAAGCTTTTGCTCTCATGCCTGAAGACTTGAAGTTTGTTGCTTCCCAATTTCGACGTCTTATAAACAGCAAACAACTCCAGGATACTTTCAGGTTCTATTCCCTGCAATGGAGGACATGGGGTACATGTTTCATACAAGCAGCTTGGCGTAGATACAAGAGAAAGAAGACTGATAGGTTATTACGTGAAGCAGAAGAGAAGCTACATGCTTTAGAAAACGAGGAAGGGTCCTCACCAAGCTTTGTTGCCACTGTATATGCATCAAGATTTGCATCAAGATTTGCATCCAATGCATTGAAACCCTTGAGAAGTGGCAAATGCAACAGAATGCCACAGACACAGAGATTACTAATGCCTCAGAAGCCAGCTGAGCCAGATTTCACTGCTAAAATAAACTAG 2079 0.4045 MTAKGQKFVRFEDWKSEPSSLSIEKNDSTSDKTKIQSSGSGGSIKKLVSRCNVLDPQGPLLQKWNKIFVITCVMAISVDPLFFYIPVIDDNGKCLDLDGKLKITASVLRTFFDLFYILHIIFQFRTGFIAPSSRVFGRGELVDDLSAIVMRYLSSYFIIDILSIIPLPQMVILAIIPIPKCSVPYAAKDLLKYTIIAQYVPRILRIYPLFKEVTSTSGILTETAWAGAAYNLFLYMLASHVVGAFWFLFSVESEVRCWRRQLKNTAFSHDFYLSCGRGTPTILSILNSSSCCPYIDPDDIEDQTVFNFGIFIEALKSRVVESSTDFPQKFFYCFWWGLRNVSSVGQNLKTSTYVWEIIFAIFIATFGLVLFALLIGNMQKYLQSTTVRVEEMRVKRRDAEQWMCHRMLPDFLKQRIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIKRHLCLDLLKKVPMFESMDTQLLDAMCDRLKPVLYTEKSDIVREGDPVDEMLFIMRGKLATATTNGGRTGFFNSSVLKAGDFCGEELLTWALDPNSSSNLPISTRTVQTISEVEAFALMPEDLKFVASQFRRLINSKQLQDTFRFYSLQWRTWGTCFIQAAWRRYKRKKTDRLLREAEEKLHALENEEGSSPSFVATVYASRFASRFASNALKPLRSGKCNRMPQTQRLLMPQKPAEPDFTAKIN. 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11233 692 MobiDBLite consensus disorder prediction 21 42 - -
Seca3g11233 692 SUPERFAMILY cAMP-binding domain-like 390 577 IPR018490 -
Seca3g11233 692 ProSiteProfiles cAMP/cGMP binding motif profile. 461 545 IPR000595 -
Seca3g11233 692 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 35 687 - -
Seca3g11233 692 Pfam Ion transport protein 64 389 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca3g11233 692 CDD CAP_ED 461 593 IPR000595 -
Seca3g11233 692 Gene3D Jelly Rolls 459 579 IPR014710 -
Seca3g11233 692 MobiDBLite consensus disorder prediction 14 42 - -
Seca3g11233 692 SMART cnmp_10 461 592 IPR000595 -
Seca3g11233 692 FunFam Cyclic nucleotide-gated ion channel 1 388 452 - -
Seca3g11233 692 Coils Coil 614 634 - -
Seca3g11233 692 Gene3D Helix hairpin bin 388 452 - -
Seca3g11233 692 Gene3D - 66 385 - -
Seca3g11233 692 FunFam Cyclic nucleotide-gated ion channel 1 459 577 - -
Seca3g11233 692 SUPERFAMILY Voltage-gated potassium channels 55 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11233 Seca-Chr3 259893872 259899207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11233 1 689 Ion Channels AT5G53130 63.085 0.0 880
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11233 K05391 - gmx:100795201 1117.83