LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g11232	ATGCTGTCCAGCAATGAAGAAAAATATGTGTCTCTCAACAATCTATCCACCAACCCAGATAATCTGAACATAAAAGTGAGGATTTCTCGTATATGGGACACACTCAACATACATCGAAAGAAAGAATTAATTAGCACAGACATGGTGCTAATTGATGAAAAGAGCAATTACATACATGCTTCTATAGGGAGAAATATTGCTCATAAGTTCAAGCCTCTTCTAAAGGAAGGAAAAATTTACACCATTAAAAATTTTGAGGTGACAAACAATAAAGAAAAATTCCCAGTGGTCCAAAAGAACCCTTCAATGTTACATTTTTGTGCCACAACAATTGTGAAAGATGCAGGTTGTGATGAAAGCATCATTCCTCACCATGTTTTTGAATTTGTTAATCTTGATGATTTACAAAGTCGGTGTGGAAAGGATGTGTTGACAGATGTGATTGGAGTTATCACAAAAGTTGGTCCAATTGAAGAGAAGAGGACTATTGGGGGCAGCGTTGATACCTTGACACTTCACTTACAAGACATAAGGGGAAATAGGGTTAAAGTGACAATATGGGATGAATATGTAAAGCTATTTGAGCAGAAATTGAAAGAAAATGTGTCTAAAGATCCTCAAGTCACTGTTGCAATTTTCACATCAACTATAATTAAAGAATTTCGAGGTGAATTGTCTATTTCCACATCAAGATCAACAAATATTTATGTCAACATAGACATACCAGAATCTAATGAGCTCATACAATCATTCAAGGATTCAAGTGATGAACCTATAGTTGATAACTTTGAGGTGTCAAAGGATGGTGTCTGTCCTAAAACAGTGAAGACTATAGCTGAACTTCTGTCCATGGCAAGTTTAAAGAGTAATACGAATGATGTGTATTGTTGTGCTGCTACTGTAAACGATATCTTGCTGAAAAATGGTTGGAATTATGTTTGTTGCCCTCATTGCAAAAAAAAGGCTGATAGGACAACTACAAATTTCAGTTGTCAACATTGCCACAAAGTTGTTGAGTATCCAATGACAAGGTTGCGTTTGGAGCTTGATGTCAAAGATTCAACAGATTCTACCATATTTGTTCTATTTCATGAAGTTGCTGAACAATTAACACAATTGAACTTAGGAGACCATGCCACAACCTTTGAAAATGAAAATGGTGATGATTTGAACCTGCCACCCCAACTCCTAAAAATCATAGGTACTACCCATGTCTTCCAAATAAAAATGAGCACCTATTTTGAAAGCTATGGAAGGCGCAGTTTCACATCAAATAAAATTCTCAAGCCAGTTGTTAAGATTGAGGACGAAGATACGAAAGAAACCTCAGGTGCCAAATCAAAGGAAAATACATTGGAAAAGATTGCTTCTTCCTTAAATGGATCTTCAGATGCAAAAAAAATAAATTCACCACAAAAGAGGAGAAAGTTAAGGTAG	1437	0.3577	MLSSNEEKYVSLNNLSTNPDNLNIKVRISRIWDTLNIHRKKELISTDMVLIDEKSNYIHASIGRNIAHKFKPLLKEGKIYTIKNFEVTNNKEKFPVVQKNPSMLHFCATTIVKDAGCDESIIPHHVFEFVNLDDLQSRCGKDVLTDVIGVITKVGPIEEKRTIGGSVDTLTLHLQDIRGNRVKVTIWDEYVKLFEQKLKENVSKDPQVTVAIFTSTIIKEFRGELSISTSRSTNIYVNIDIPESNELIQSFKDSSDEPIVDNFEVSKDGVCPKTVKTIAELLSMASLKSNTNDVYCCAATVNDILLKNGWNYVCCPHCKKKADRTTTNFSCQHCHKVVEYPMTRLRLELDVKDSTDSTIFVLFHEVAEQLTQLNLGDHATTFENENGDDLNLPPQLLKIIGTTHVFQIKMSTYFESYGRRSFTSNKILKPVVKIEDEDTKETSGAKSKENTLEKIASSLNGSSDAKKINSPQKRRKLR.	479

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g11232	478	Pfam	Replication protein A OB domain	139	238	IPR031657	-
	Seca3g11232	478	Gene3D	-	7	114	IPR012340	-
	Seca3g11232	478	SUPERFAMILY	Nucleic acid-binding proteins	127	252	IPR012340	-
	Seca3g11232	478	SUPERFAMILY	Nucleic acid-binding proteins	8	115	IPR012340	-
	Seca3g11232	478	CDD	RPA1_DBD_A_like	24	112	-	-
	Seca3g11232	478	MobiDBLite	consensus disorder prediction	435	478	-	-
	Seca3g11232	478	Gene3D	-	264	442	IPR012340	-
	Seca3g11232	478	CDD	RPA1_DBD_B_like	146	252	-	-
	Seca3g11232	478	Gene3D	-	122	259	IPR012340	-
	Seca3g11232	478	PANTHER	OS03G0429900 PROTEIN	9	461	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Seca3g11232	478	SUPERFAMILY	Nucleic acid-binding proteins	275	412	IPR012340	-
	Seca3g11232	478	MobiDBLite	consensus disorder prediction	449	467	-	-
	Seca3g11232	478	Pfam	Domain of unknown function DUF223	48	117	IPR003871	-
	Seca3g11232	478	Pfam	Replication factor-A C terminal domain	297	418	IPR013955	-
	Seca3g11232	478	CDD	RPA1_DBD_C	278	438	IPR047192	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g11232	Seca-Chr3	259888433	259890671	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g11232	8	474	Core DNA Replication Machinery Family	AT4G19130	23.400	4.02e-20	92.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g11232	-		-	mtr:120580096	466.848