Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11227 ATGGGATACTTACCAGAACAATCAACAGATTCAGACTTGAAATCACCCTTAACTCCAATGCCAGATGAGAACAGAGAATCAATTTTGTGTGCTTATGCTTCCTGGCTAGAAAAGCATCCTTCTGCTTTGGACAATTTTGAGGAAATGATGAGCATTGCCAAAGGGAAAAACATTGTTGTGTTTTTGGACTATGATGGAACACTCTCACCAATTGTAGATGACCCTGATCAGGCTTACATGAGTGATGCTATGCGTGCAGCTGTACGTGAAGTTGCTAGTTGTTTTCCCACTGCAATTGTTAGTGGAAGGCGTAGGAGTAAGGTATATGAATTTGTTAAGTTAAGGAATGTCTATTATGCTGGAAGTCATGGTATGGATATATCAACCCCATTAGGCTCTTCAAAATGTGAAGATCAGAAGCATCAGATCAAATCTGTTGATGAAAAGGGAAATCATGTTGTTCTTTTTCATCCAGCAAAAGAATTTTTGGCAACAATCCAAGAGATAATTAAGGTTCTGAAAGAAAAAACCAAAAGAATAAAAGGCTCTATGGTTGAGGATAATATGTTCTGTGTCTCTGTACACTACAGGCGTGTGAAAAAAGAAGAGGATGTTGGAGTTCTCAGAGAAATTGTGGAGTCAATTATGAAAGATTACCCGAATTTTCACATATCAGGAGGAAAAAAGGTAATGGAGATACGCCCAGATGTAAACTGGGATAAAGGCAGGGCTCTGATGTATTTGCTTGGCACTCTTGGATTTGACACCTCTAATGATGTTCTACCAATATACCTTGGGGATGACAGAACTGATGAAGATGCTTTTAAGGTTATAAGACACAATGGACTAGGTTTTCCCATCATTGTTTCTTCAATTGCTAAGGAGACCAAGGCTTCATATTCTCTGCGTGACCCTGCTGATGTGATGACTTTCTTGATTCGTTTAGCAAAATGGAAGAAGAACCAGTAA 969 0.3891 MGYLPEQSTDSDLKSPLTPMPDENRESILCAYASWLEKHPSALDNFEEMMSIAKGKNIVVFLDYDGTLSPIVDDPDQAYMSDAMRAAVREVASCFPTAIVSGRRRSKVYEFVKLRNVYYAGSHGMDISTPLGSSKCEDQKHQIKSVDEKGNHVVLFHPAKEFLATIQEIIKVLKEKTKRIKGSMVEDNMFCVSVHYRRVKKEEDVGVLREIVESIMKDYPNFHISGGKKVMEIRPDVNWDKGRALMYLLGTLGFDTSNDVLPIYLGDDRTDEDAFKVIRHNGLGFPIIVSSIAKETKASYSLRDPADVMTFLIRLAKWKKNQ. 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11227 322 Gene3D - 58 153 IPR023214 -
Seca3g11227 322 Gene3D - 156 322 IPR023214 -
Seca3g11227 322 MobiDBLite consensus disorder prediction 1 21 - -
Seca3g11227 322 FunFam Trehalose 6-phosphate phosphatase 165 322 - -
Seca3g11227 322 Pfam Trehalose-phosphatase 61 305 IPR003337 GO:0003824|GO:0005992
Seca3g11227 322 NCBIfam trehalose-phosphatase 56 316 IPR003337 GO:0003824|GO:0005992
Seca3g11227 322 NCBIfam HAD-IIB family hydrolase 60 281 IPR006379 -
Seca3g11227 322 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 26 321 IPR044651 GO:0004805|GO:0005992
Seca3g11227 322 FunFam - 58 110 - -
Seca3g11227 322 SUPERFAMILY HAD-like 59 320 IPR036412 -
Seca3g11227 322 FunFam Trehalose 6-phosphate phosphatase 159 236 - -
Seca3g11227 322 CDD HAD_TPP 59 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11227 Seca-Chr3 259802618 259805122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11227 54 317 Trehalose Biosynthesis Gene Families AT1G06410 25.532 1.33e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11227 K01087 - gmx:100799466 478.018