Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11226 ATGTACACATCAAGGAAGAAAATTCACAAAGATAAGGATGCTGAGCCAACTGAATTTGAGGAATCAGTTGGACAGGCATTGTTTGATCTAGAAAACACCAACCATGAGCTGAAAAGTGATCTGAAAGATTTATACATAAATTCAGCAGTCCAAATTGATGTTTCTGGCAACCGCAAGGCTGTGGTTATCCATGTCCCGTACAGATTAAGGAAAGGTTTCCGCAAGATTCATGTCAGGCTTGATGTAATCTTGGTTGCCACCCGGAGGATATTGAGGCCACCAAAGAAAGGTTCTGCTGTTCAGCGTCCCCGCACCCGTACACTCACTGCTGTGCACGAGGCAATGCTGGAGGACATTGTATTGCCTGCTGAGATTGTTGGGAAGCGTGTTAGGTATCGAATTGATGGATCCAAGATTATGAAGGTAATGCTATTGTAG 438 0.4406 MYTSRKKIHKDKDAEPTEFEESVGQALFDLENTNHELKSDLKDLYINSAVQIDVSGNRKAVVIHVPYRLRKGFRKIHVRLDVILVATRRILRPPKKGSAVQRPRTRTLTAVHEAMLEDIVLPAEIVGKRVRYRIDGSKIMKVMLL. 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11226 145 PANTHER 40S RIBOSOMAL PROTEIN S7 1 144 IPR000554 GO:0003735|GO:0005840|GO:0006412
Seca3g11226 145 Pfam Ribosomal protein S7e 7 144 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11226 Seca-Chr3 259797197 259798695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11226 1 144 Cytoplasmic Ribosomal Protein Gene Family AT3G02560 74.194 1.03e-81 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11226 K02993 - gmx:100499757 268.085