Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11225 ATGAATAATAGTTTTGACTCTACTTATTTTTTAAGTATTTTCATTCAGCTTCCATCAATTGAAGTTGTTGCAAAGTCAACTGCAAGTGATCATGATCAAAAGCGGCCACCAATTCTTGTTCTTGTCATATGCCCAACTCGAGAGCTTGCATGTCAAGCTGCTGCAGAAGCCACCAAACTGCTTAAGTATCATCCTACCATTGGTGTTCAAGTTGTGATTGGAGGAACAAGACTCGCTTTAGAACAGAAGCGCATGCAAGCAAACCCTTGCCAGATCCTTGTTGCTACACCCGGAAGGCTTAGAGATCATGTTGAAAATACTGCTGGTTTTGCAACTAGGCTTAGGGGTGTGAAGGTCTTGGTGCTTGATGAAGCTGATCATTTATTAGACATGGGATTCCGCAGAGATATTGAGAAAATAATTGACGCAGTCCCTAAACAACGACAGACACTTATGTTTTCTGCTACCATTCCAGACGAGGTGCGTCAAGTCTGTCATATTGCTCTGAGAAGAGATCATGAATTTATTAATACAGTTCAAGAGGGTACCGAGGAGACACATTCACAGGTCCGCCAGATGCATTTAGTTGCCCCATTAGACAAACATTTCTCTTCACTCTATGTTATTCTGAAGGAGCACATTGCAGATGATGTTGACTATAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACAAGACTTGTTGCTGAACTTCTTAGTGAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAGGAATTTCGGAAATCAAAGGGTCTCATCCTGGTTACTTCAGATGTATCTGCGCGTGGAGTTGATTATCCAGATGTTACTCTTGTTGTACAGGTTGGTTTACCAGCTGATAGAGAACAGTACATACATAGACTGGGTAGAACAGGGCGAAGAGGGAAAGAAGGGCAGGGCATACTGCTACTGGCTCCTTGGGAAGAGTTCTTTTTATATACCACAAAAGATTTGCCTATTGAGAAAGCTCCAGTACCTTCAGTTGATCCTGACACTAAGAAAAAGGTGGAAAAGGCTCTATCCAATGTGGAAATGAAGAATAAAGAAGCAGCTTATCAGGCATGGCTTGGTTACTACAATTCCAATAAGAAAGTGGGGAAAGACAAGTATAGGTTAGTGGAGCTTGCTAACGAGTTCAGTAGAAGCATGGGGCTTGATAATCCTCCTGCTATCCCTAAGCTAGTCCTTGGCAAGATGGGTCTTAGAAATATCCCTGGTTTGCGTGCCAAATAG 1290 0.4217 MNNSFDSTYFLSIFIQLPSIEVVAKSTASDHDQKRPPILVLVICPTRELACQAAAEATKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHVENTAGFATRLRGVKVLVLDEADHLLDMGFRRDIEKIIDAVPKQRQTLMFSATIPDEVRQVCHIALRRDHEFINTVQEGTEETHSQVRQMHLVAPLDKHFSSLYVILKEHIADDVDYKVLVFCTTAMVTRLVAELLSELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVVQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLYTTKDLPIEKAPVPSVDPDTKKKVEKALSNVEMKNKEAAYQAWLGYYNSNKKVGKDKYRLVELANEFSRSMGLDNPPAIPKLVLGKMGLRNIPGLRAK. 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11225 429 Gene3D - 184 408 IPR027417 -
Seca3g11225 429 SMART helicmild6 233 314 IPR001650 -
Seca3g11225 429 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 12 175 IPR014001 -
Seca3g11225 429 CDD SF2_C_DEAD 190 323 - -
Seca3g11225 429 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 210 360 IPR001650 -
Seca3g11225 429 Pfam DEAD/DEAH box helicase 16 163 IPR011545 GO:0003676|GO:0005524
Seca3g11225 429 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 332 IPR027417 -
Seca3g11225 429 Gene3D - 12 176 IPR027417 -
Seca3g11225 429 Pfam Helicase conserved C-terminal domain 211 314 IPR001650 -
Seca3g11225 429 PANTHER RNA HELICASE 17 359 - -
Seca3g11225 429 SMART ultradead3 8 193 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11225 Seca-Chr3 259786449 259791516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11225 22 342 Eukaryotic Initiation Factors Gene Family AT3G19760 26.113 1.24e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11225 - - gmx:100795739 766.918