Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11217 ATGGGGGAGAACATCAAGTGTGAACAAGTTGGTCTCATTGATGAGTTAATGCAAGGAAAGAAGCTAGCAAAGCAGCTTTGTGACCATTTGGTCTCTCCATCATCATCTCATGTATCCAATGAAGTCTTAATTGAGAAAATACTTTCATCCTATGAGAAAGCACTCACCATGCTCAAATGGAGGGCTAATGTGGGGGAAAGTAAGACCAACAATGGGAACATGATGGATTCCCATTGTTCTTTCACAAATGGGAGCCCCAAAAGTGAGGTGCTAGACCCAGAGGTTAAGCACAAAGATGTCTTCAAGAAAAGAAAGACCATGCCCAGTTGGACAAAACAAGTGGTGTGCTCAGGAACAGCCCTTGAGAGGTCTCTGGATGATGGTTACAGCTGGAGAAAATATGGCCAGAAGGACATTCTTGGAGCTAAGTTTCCAAGAGGATATTATAGATGCACACATAGAAATGCCCAAGGTTGTCTGGCCACAAAACAAGTGCAAAAGTCAGATGAAGACGAAAAGATATTTGAGATTACCTACAAAGGAAGACACACATGCACCCAAGCTAGGAATTTAAACAAGGCATTCCCATCAACAACAAAGATTGGCTTGGCAGAAAATAAACACCAAACCCATCAAAAAAATCAACCACAAGAAGAGAAAACAGAACAACCCCAAGGGACAATTTTCTCTTTTGGATCAGATCTTGAAGTTAAATTAGAGGAGTTGGACAACAAGGAGGAAATCTTCCCATCATTTAGCTTTCATTCTCCATCAAAAGGATCTGAAAATGAGAATAACAACATATTTTCAGATACCATGATTGAAAGTAACTTCATGGAAACCTTTTCCCCTGCTGCATTCATATCACCAGAGAATTCAGAATCAAACATGTTCTGTTTGTCACCATACCACTTGAGCAGCACAGGACTAGGCCTAAGTGTGCAAACCTCAGAATCTGATATCACAGAGATAGTTTCAGCCCCAACTTCAGTCACCAATTCCCCTATATTAGATTTGGATTTCTTCCTTAACAAGATGGATTTCGACACAGATTTCCCTATCAACAGCCCAGGATTTTGCTCTTGA 1086 0.4079 MGENIKCEQVGLIDELMQGKKLAKQLCDHLVSPSSSHVSNEVLIEKILSSYEKALTMLKWRANVGESKTNNGNMMDSHCSFTNGSPKSEVLDPEVKHKDVFKKRKTMPSWTKQVVCSGTALERSLDDGYSWRKYGQKDILGAKFPRGYYRCTHRNAQGCLATKQVQKSDEDEKIFEITYKGRHTCTQARNLNKAFPSTTKIGLAENKHQTHQKNQPQEEKTEQPQGTIFSFGSDLEVKLEELDNKEEIFPSFSFHSPSKGSENENNNIFSDTMIESNFMETFSPAAFISPENSESNMFCLSPYHLSSTGLGLSVQTSESDITEIVSAPTSVTNSPILDLDFFLNKMDFDTDFPINSPGFCS. 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11217 361 Gene3D WRKY domain 111 188 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g11217 361 Pfam WRKY DNA -binding domain 126 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g11217 361 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 11 307 IPR044810 GO:0003700
Seca3g11217 361 SMART WRKY_cls 125 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g11217 361 ProSiteProfiles WRKY domain profile. 120 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g11217 361 FunFam WRKY transcription factor 53 111 188 - -
Seca3g11217 361 SUPERFAMILY WRKY DNA-binding domain 124 187 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g11217 361 MobiDBLite consensus disorder prediction 207 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11217 Seca-Chr3 259646530 259649574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11217 13 289 WRKY Transcription Factor Family AT5G24110 38.298 7.55e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca3g11217 WRKY 1.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11217 - - aprc:113849885 559.681