Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11203 ATGACTGCAAATGGTGGGGCAGGGACTGAGGAGCACAAGAGGAAAACTAATGATCCTTTTCTCAAGCCTGGGGGACACCAAAATATGCCAAGGTCACCTAGATTTAGGAAGGACTGGCCAGAGGATTTTCCAAATGACAATGTGATTGTAAATGGGGATAACAGTTTGAGTAGATATATTACTTCCTTAGCTGGATCTGGACCTCCTAGTACTAGCTTTTGTTCCACCACTGGTTCTGAACACTTTGTTGAAGATTTGCATGTTAAGAATTATAAGAACCCGGACATAGCTTTAGTTAGCCACCCATATAATTCCAGACAGTCTCAGAGGAATCAATTAGCTATTGAGTCTAAGCAAAGTAGCTTGAGTAGAGAAATTGCACCGAAGGTTGAAGAACAGATACCACTCAGATTAAGCAAAGGACTTAAGGGAATTGAATCTGAATTTTGGGGCCTGAAGTCTGTGTCTAGAAAGAATGTAAATCATGATCCACAGAAAGTCTATGCAAATATAAGCAATATAGACAAGACCATCACCCCAAGCAATGCACATCTTATCAGCAGTATTACAAAGAGTACTTCATCTACATATAATTTTCCTCAGTTGATTGTAGAGCAAACAGTAAAGGGAAAGATTTTCAAAGATTTGGACAAAAGCTTCAGTCTTGGAGGAGCACTAATGAGACAGGAGGATGAGAAACCTTCTTCTTCAACTAAGTTTCAATCTGATACACTGCTGAGATCAAATGTTAATGATAATATGCCTTCCTTGCAAGGAAATGTCATGTCTGGCACAGAATCTTTGAAGGATGGACTCAACTTAAGAGAGTGGCTGAAGTTTGAAGGTCATAAAATGAAGAAATCAGAAAGGATACATATATTTAAACAGATATTAGAATTGGTTGATGTTGCACACTCCCAAGGAGTTGTCTTGCAAGACTTAAGACCATCTTGTTTCACCTTATTGCCTTCAAGTAAAATTAAATACATTGGTTCATCCTGTCAACAAGAGTTAGATAATAAATCCATGACATGTAATGTGACAAGTAAAAGGCCTTTGGAACAGGATATCTGTGATTGCCAAAGTTTGAGTACAAAGCAGCAAAAGCTCTGTGAGGAGACAAGTTCTCTTAGGCAGCAGCATCACTTCACCTGTGTTCATGGCTGCAGGACTACAACAGTGAATCAAACTGATTCTGACATAAACTGGACCATGGGATCAAGGAGTAAAGAAAGTCTGCACCAAGATGGCTCCAGTTGTCAACATACTTCTACAGAAGAAAAACAGGTTATGTCTGCAACCATTCAGTTAGAAGAGAAGTGGTATTGTAGTCCAGAAGTGCTCAATGGTGGACTTTGCACATTTTCATCAAATATTTATAGCCTTGGAGTTCTTCTTTTTGAGTTATTGTGCAATATTGAGTCATTGGAAGCACACTCAACTGTGATGTTGGATCTACGACATAGAATCTTACCACCAAAATTTCTATCAGAAAATCCAAAGGAAGCTGGTTTTTGTCTTTGGCTTCTGCATCCTGAACCTTCTGCCCGCCCCAATACCAGGGTTATTTTAGAATCTGAATTTATATGTGAATCAGAGGAATCAAATTCTGGAGAAGATATTGTAGTATCTGAAGAAGATGAGGCTGAAACAGAGCAATTACTACATTTTTTAATTTCTCTTAAAGAAGTAAAGAAAAAACAGGAAGCCAAATTGGCAGAAGAGCTTAATTGCCTGGATGAAGATATTAAGGAGGTAGAAAGAAGTTATTCATATGGAACACCTTTGGCACAAATGAACTATCCTGAATTGGGAGGAAACAGTTTACATTTTCAAGGTCCTTCCAGTTCAGATAGTAGATCTATTCCAGGGTCATTTGTTGATGATGCAAGATTTATGAGTAATATAAGTGAGCTAGAGAAGTCTTACTTTTCCAAGAGATCCCAAGTCCTGCTCAAAGAGGCTTCAGCTGTTGAAAGCAATGATAAAAATGTGATAGAAAATAGATGGAGATTGACTCATGTAGAGAATGGTAATAAAGAGCCAGGAAGAATTCAGAGTTATGTTGGTTGTCTAGGACCCTTCTTTGAAGGTTTATGCAAGTTTGCTAGACACAGAAAGTTTGAGGAACGTGGAACATTAAGGAATAGAGATCTGCTTAGTTCAGCCAATGTAATATGTGCTTTAAGTTTTGACCGTGATGAGGATTACATTGCAGCAGGTGGAGTTTCAAAGAAAATAAAGATTTTTGACCTGAATGCTATTTCCAGTGATTCTATTGACATCCAGTATCCAGTTGTTGAGATGTCAAATAAATCAAAGCTTAGCTGTGTGTGCTGGAACAGTTATATAAAAAATCATCTGGCATCTACTGACTATGATGGTGTGGTTCAGATGTGGGATGCAAGCACTGGTCAGCCATTGTCTCAATACATGGAGCACCAAAAGAGAGCTTGGTCTGTTCACTTTTCTCTGTCTGACCCAAAAATGTTTGCTAGTGGAAGTGATGACTGCTCTGTCAAACTCTGGAATATCAGTGAGAGAAATTCTCTAGGAACCATCTGGAACCCTGCCAATGTATGTTGTGTTCAGTTCTCTGCTTACTCAGCACATCTTTTATTTTTTGGATCAGCTGATTACAAGGTGTATGGTTATGATCTTCGTCACACTAGAATCCCTTGGTGCACATTAGGTGGTCATAGCAAAGCTGTTAGCTATGTAAAACTTCTAGATGCTGAAACAGTGGTCTCTGCTTCCACTGACAACTCTTTGAAGCTCTGGAACCTCAAGAAAACCAGCTCTTCTGGGTTGTCATCTGATGCTTGTGACTTAACCTTTAAAGGTCATATTAATGAAAAGAATTTCGTGGGTTTATCCGTATTGGATGGATTCATTGCATGTGGCTCAGAATCTAATGAGGTATAG 2925 0.388 MTANGGAGTEEHKRKTNDPFLKPGGHQNMPRSPRFRKDWPEDFPNDNVIVNGDNSLSRYITSLAGSGPPSTSFCSTTGSEHFVEDLHVKNYKNPDIALVSHPYNSRQSQRNQLAIESKQSSLSREIAPKVEEQIPLRLSKGLKGIESEFWGLKSVSRKNVNHDPQKVYANISNIDKTITPSNAHLISSITKSTSSTYNFPQLIVEQTVKGKIFKDLDKSFSLGGALMRQEDEKPSSSTKFQSDTLLRSNVNDNMPSLQGNVMSGTESLKDGLNLREWLKFEGHKMKKSERIHIFKQILELVDVAHSQGVVLQDLRPSCFTLLPSSKIKYIGSSCQQELDNKSMTCNVTSKRPLEQDICDCQSLSTKQQKLCEETSSLRQQHHFTCVHGCRTTTVNQTDSDINWTMGSRSKESLHQDGSSCQHTSTEEKQVMSATIQLEEKWYCSPEVLNGGLCTFSSNIYSLGVLLFELLCNIESLEAHSTVMLDLRHRILPPKFLSENPKEAGFCLWLLHPEPSARPNTRVILESEFICESEESNSGEDIVVSEEDEAETEQLLHFLISLKEVKKKQEAKLAEELNCLDEDIKEVERSYSYGTPLAQMNYPELGGNSLHFQGPSSSDSRSIPGSFVDDARFMSNISELEKSYFSKRSQVLLKEASAVESNDKNVIENRWRLTHVENGNKEPGRIQSYVGCLGPFFEGLCKFARHRKFEERGTLRNRDLLSSANVICALSFDRDEDYIAAGGVSKKIKIFDLNAISSDSIDIQYPVVEMSNKSKLSCVCWNSYIKNHLASTDYDGVVQMWDASTGQPLSQYMEHQKRAWSVHFSLSDPKMFASGSDDCSVKLWNISERNSLGTIWNPANVCCVQFSAYSAHLLFFGSADYKVYGYDLRHTRIPWCTLGGHSKAVSYVKLLDAETVVSASTDNSLKLWNLKKTSSSGLSSDACDLTFKGHINEKNFVGLSVLDGFIACGSESNEV. 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11203 974 SUPERFAMILY WD40 repeat-like 723 973 IPR036322 GO:0005515
Seca3g11203 974 Gene3D Transferase(Phosphotransferase) domain 1 270 539 - -
Seca3g11203 974 Gene3D - 696 974 IPR015943 GO:0005515
Seca3g11203 974 ProSiteProfiles Trp-Asp (WD) repeats profile. 811 853 IPR001680 GO:0005515
Seca3g11203 974 ProSitePatterns Trp-Asp (WD) repeats signature. 788 802 IPR019775 -
Seca3g11203 974 PANTHER PROTEIN SPA1-RELATED 2 51 974 IPR044630 GO:0009640
Seca3g11203 974 ProSiteProfiles Trp-Asp (WD) repeats profile. 897 937 IPR001680 GO:0005515
Seca3g11203 974 PRINTS G protein beta WD-40 repeat signature 915 929 IPR020472 -
Seca3g11203 974 PRINTS G protein beta WD-40 repeat signature 788 802 IPR020472 -
Seca3g11203 974 PRINTS G protein beta WD-40 repeat signature 831 845 IPR020472 -
Seca3g11203 974 ProSiteProfiles Trp-Asp (WD) repeats profile. 768 810 IPR001680 GO:0005515
Seca3g11203 974 Coils Coil 569 589 - -
Seca3g11203 974 Pfam WD domain, G-beta repeat 726 751 IPR001680 GO:0005515
Seca3g11203 974 Pfam WD domain, G-beta repeat 806 844 IPR001680 GO:0005515
Seca3g11203 974 ProSitePatterns Trp-Asp (WD) repeats signature. 915 929 IPR019775 -
Seca3g11203 974 SMART serkin_6 197 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11203 974 SUPERFAMILY Protein kinase-like (PK-like) 266 531 IPR011009 -
Seca3g11203 974 SMART WD40_4 890 928 IPR001680 GO:0005515
Seca3g11203 974 SMART WD40_4 762 801 IPR001680 GO:0005515
Seca3g11203 974 SMART WD40_4 847 886 IPR001680 GO:0005515
Seca3g11203 974 SMART WD40_4 716 751 IPR001680 GO:0005515
Seca3g11203 974 SMART WD40_4 804 844 IPR001680 GO:0005515
Seca3g11203 974 ProSiteProfiles Protein kinase domain profile. 132 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11203 974 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 897 930 - -
Seca3g11203 974 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11203 Seca-Chr3 259424699 259430869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11203 808 974 Miscellaneous Gene Families AT5G08390 24.405 1.01e-07 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Seca3g11203 WD40 0.017 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11203 K16240 - gmx:100799267 1418.68