Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11202 ATGGAACAATTTAGACAGATTGGGGAGGCACTTGGGAGTTTGAAGGCTGTGATGGTATTCAGGGAGAACATTCAAATCAATCAGAGGCAATGTTGTTTGTTGATGGATGTCTTCAGTTTTGCATATGAATCTATTGCAGATGAGATTATACAGAACCTGAAATTTGAAGAGAAGAATGGGAAGTGGAGGGTTCTTGAACAGCCCTTGAGAGAGATCCATAGGATATTCAGAGAAGGAGAAGTTTACATTAGGCATTGTTTGGAAGCAAAGGACTGGTGGGCTAAAGCTATTACCTTGTGCCACAACACAGACTCTGTTGAGTTTTACATTCACAACTTGCTTAGTTGCATGCCAATTGTAATTGAAGCTATTGAATCTGCTGCAGAAACATCAGGGTGGGATCAGGATGAGATGCAAAGGAAGAAGCTTATCAACTCCAACAAGTACAGGAAAGAATATAGAGACATGAAACTTTTCCAGTGGAAATTTGGGAAGCAGTACCTCATTACTCAGGACTTTTGCAACCGTTTTGATACAGTTTGGAAGGAAGACAGATGGTTTCTTTCCTACAAAATCCATGAGAAGAAAGTGGCAGGTGCAACAAAGTTTGAGAAGAGATTAATAGATCTCCTTTTGAGGAATTTAGAAAGACCAGACTCACTGGAAAGGAAGCTCCTACCAAGCTCAATATTGGTTGGATCTAAGGACTACCAAGTGAGGAGAAGAATGGGGAATGGAAGTCAGTACAAGGAGATTCAATGGTTAGGTGAAAGCTTTGTTGTAAGACATTTTTCTGGGGACATTGATGCTTTGGAACCTGAGATCAATGAACTTTTATCTCTTTCCCACCCAAATATCATGGACTGCCTTTGTGGATTTACTGATGAGGAGAGGAGAGAGTGCTTTTTGTTAATGGAATTGATGAGCAAGACTCTTACCACCAACATCAATGAGATTCATGGCCCAAGGAAGCGATTACCATTCTTGCTTCATGTGGCAGTTGATGTGATGCTTCAGATTGCCAGAGGAATGGAATATCTGCATTCAAAGAAAGTATATCATGGAGAACTAAACCCTTCAAACATTCTTGTTAAGCAGAGAGGTACATCCCCAGAAGGTTACTTGCATGCCAAGGTATCAGGGTTTGGCCTATCTTCTGTTAAGGACTTGAACCAGAAAGGGAATAATACAAATCATAATGGAATTCTCCCATTCATCTGGTATTCTCCTGAAGTACTGGAAGAGCAAGAACAATTTGGGGGTGCAACAATCTCCAAGTACACAGAGAAATCTGATGTGTACAGTTTTGGAATGGTGTGCTTTGAGCTTCTAACTGGTAAAGTCCCTTTTGAAGACAGTCATCTTCAAGGGGAGAAAATGAGCAGAAACATAAGGGCAGGAGAAAGGCCACTTTTTCCTCTCAATTCACCAAAATATGTTATCAACTTGACAAAGAGATGTTGGCATGTTGACCCAAATCAACGTCCAAGCTTCTCCTCCATATGTAGAGTTCTTCGTTATATAAAAAGATTTCTTGTATTGAATCCTGGTTACAATAGCCAGCCAGAACCACCAGTGCCACCTGTGGATTACTGTGATGTAGAGTCAGCACTTCTGAGGAAGTTTCCTTCTTGGGGAAGTTCTGAATCTTTACTAGTATCACATGTTCCATTTCAAATGTTTGCTTATCGAGTTATTGAGCAAGAAAAAGCAAGTACATGCTCTAAGGATAACTCTGAATCTGGAAGTGATGCATCAGCCTGTGGTGATGAACTTGTTACTTCTGGGGATGAACCATATCTATCAACAACTGAAAAGAAATCTTTACTTGGACCTGACAGTATAAACAGAAAGCTTGCACTGACCAGGAAATCTCTAGATTTGAGGATCAAACAACCAGGTACACCGAGAGGAAGATCAGCTAGACCTCCACAAATGTCCCCTCGCGTGCGAAGTCTGAGGATTAATTCAGATAAACACCTGATATCAAGTCCAAGAATGATAAGAAGATCATCTTCTGGTCATGTCTCAGACTCTGAGCTTTCTTAG 2049 0.4075 MEQFRQIGEALGSLKAVMVFRENIQINQRQCCLLMDVFSFAYESIADEIIQNLKFEEKNGKWRVLEQPLREIHRIFREGEVYIRHCLEAKDWWAKAITLCHNTDSVEFYIHNLLSCMPIVIEAIESAAETSGWDQDEMQRKKLINSNKYRKEYRDMKLFQWKFGKQYLITQDFCNRFDTVWKEDRWFLSYKIHEKKVAGATKFEKRLIDLLLRNLERPDSLERKLLPSSILVGSKDYQVRRRMGNGSQYKEIQWLGESFVVRHFSGDIDALEPEINELLSLSHPNIMDCLCGFTDEERRECFLLMELMSKTLTTNINEIHGPRKRLPFLLHVAVDVMLQIARGMEYLHSKKVYHGELNPSNILVKQRGTSPEGYLHAKVSGFGLSSVKDLNQKGNNTNHNGILPFIWYSPEVLEEQEQFGGATISKYTEKSDVYSFGMVCFELLTGKVPFEDSHLQGEKMSRNIRAGERPLFPLNSPKYVINLTKRCWHVDPNQRPSFSSICRVLRYIKRFLVLNPGYNSQPEPPVPPVDYCDVESALLRKFPSWGSSESLLVSHVPFQMFAYRVIEQEKASTCSKDNSESGSDASACGDELVTSGDEPYLSTTEKKSLLGPDSINRKLALTRKSLDLRIKQPGTPRGRSARPPQMSPRVRSLRINSDKHLISSPRMIRRSSSGHVSDSELS. 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11202 682 SUPERFAMILY Protein kinase-like (PK-like) 227 514 IPR011009 -
Seca3g11202 682 FunFam Kinase family protein 234 518 - -
Seca3g11202 682 Pfam Protein tyrosine and serine/threonine kinase 270 504 IPR001245 GO:0004672|GO:0006468
Seca3g11202 682 PANTHER SERINE-THREONINE PROTEIN KINASE 271 510 - -
Seca3g11202 682 ProSiteProfiles Protein kinase domain profile. 237 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11202 682 MobiDBLite consensus disorder prediction 630 682 - -
Seca3g11202 682 Gene3D Transferase(Phosphotransferase) domain 1 233 513 - -
Seca3g11202 682 MobiDBLite consensus disorder prediction 573 608 - -
Seca3g11202 682 Pfam Protein of unknown function (DUF1221) 21 234 IPR010632 -
Seca3g11202 682 MobiDBLite consensus disorder prediction 666 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11202 Seca-Chr3 259420806 259424967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11202 274 505 MAP Kinase Kinase Kinase AT5G58950 30.290 3.84e-24 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_Gdt Seca3g11202 PK_Tyr_Ser-Thr 6.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11202 - - gmx:100813704 1166.76